1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGTACATCAACCTTGAGCCACGAAGGCACCGCATATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctatctccgatgctgttgaaattcttgcacgtgtaattatttggaacaaggaaaggtttatgattaggattgtcatctcttgtaatgatttttgtgataaaattacatgcgataagcagcaagtttctacgtgtgttttctttatgacatctctgcatttgtagttttcttcaacctatactttttgttgcag
species | Physcomitrella patens |
transcript | PP1S208_168V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCCEST: gi|208344499|gb|DC905060.1|DC905060
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
EST: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCCEST: gi|18361861|gb|BJ193928.1|BJ193928
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
EST: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCCEST: gi|100400993|gb|BY973046.1|BY973046
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
EST: ATGGCCCCACATTTGGGANAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCCEST: gi|100390547|gb|BY952955.1|BY952955
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
EST: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCCEST: gi|208390623|gb|DC937555.1|DC937555
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
EST: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAG ATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
genomic: ATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctat ... tttgttgcagATGGACCACACAATATCGTACACTAAGAATGGTGTCAACCTAGGAGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTACATCAACCTTGAGCCACGAAGGCACCGCATATGGCCCCACATTTGGGAAAGGAGATGTCATTGGGTGCATCCTCAATCAGgttagtctatctccgatgctgttgaaattcttgcacgtgtaattatttggaacaaggaaaggtttatgattaggattgtcatctcttgtaatgatttttgtgataaaattacatgcgataagcagcaagtttctacgtgtgttttctttatgacatctctgcatttgtagttttcttcaacctatactttttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG