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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatatgcgctcctttatgtaacaaagactttagatgcacatgttactgatatgctttctaatattgaaaaaaatgtctttgcaacattgctccaa...

Basic information

species Physcomitrella patens
transcript PP1S205_59V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208381557|gb|DC923143.1|DC923143
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162165614|gb|FC341453.1|FC341453
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|208376776|gb|DC918731.1|DC918731
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162200281|gb|FC376322.1|FC376322
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162200282|gb|FC376323.1|FC376323
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162255054|gb|FC430927.1|FC430927
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162168295|gb|FC344609.1|FC344609
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|67695588|gb|BJ955821.1|BJ955821
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|67693124|gb|BJ953357.1|BJ953357
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162165615|gb|FC341454.1|FC341454
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162248720|gb|FC424573.1|FC424573
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         TTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162258766|gb|FC434565.1|FC434565
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162181475|gb|FC358089.1|FC358089
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|162168296|gb|FC344610.1|FC344610
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|208394748|gb|DC924079.1|DC924079
EST:     GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
EST: gi|37849627|gb|BJ607635.1|BJ607635
EST:     GACACATTGCGAGAGGCTAACCTCCATTTTTCTTGA-GGCATGCTGAATT                         CTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC
genomic: GACACATTGCGAGAGGCTAACCTCCA-TTTTCTTGAGGGCATGCTGAATTgtaaggatat ... ttgcttacagCTGAGGCACGAGAGCAGTATCCTGAACTCTTCAGGTCGTGGAGAGAGGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATTgtaaggatatgcgctcctttatgtaacaaagactttagatgcacatgttactgatatgctttctaatattgaaaaaaatgtctttgcaacattgctccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG