1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGATGCTAGTAACAACAACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcgcttaaacggtaactctgctgctgtaagagatagttttaacttttagaccctagtcaataaagtgatctcgcgcacagagtctcaactgtgcggccttaaagattgacattttttcagatcttcgcggtgtgaaacgtccttctgagcatattttccgttgattacag
species | Physcomitrella patens |
transcript | PP1S204_22V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTEST: gi|18328336|gb|BJ160340.1|BJ160340
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATT
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAEST: gi|18329206|gb|BJ161212.1|BJ161212
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAA
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAEST: gi|100396548|gb|BY990180.1|BY990180
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATA
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTEST: gi|18358397|gb|BJ190456.1|BJ190456
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATT
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATT
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCTAGTAACAACAACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcgcttaaacggtaactctgctgctgtaagagatagttttaacttttagaccctagtcaataaagtgatctcgcgcacagagtctcaactgtgcggccttaaagattgacattttttcagatcttcgcggtgtgaaacgtccttctgagcatattttccgttgattacag
- - - - - - - - - - - AAGGAA