1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGAGGCCATCATGAAGCTTGCAAGGACTCGTCTTGCTCCTTCTGCTCTGGCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagcagttgcggtgttttgtggagtttgtgcaactttctgtaagatcgattggttcgactgtctactgaagatctcatgacatctactcggagagatgcttgctttcagaatttaggttctcgttactgtggttgtgatttgaaggcag
species | Physcomitrella patens |
transcript | PP1S19_322V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAG TTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCAEST: gi|37828706|gb|BJ586718.1|BJ586718
genomic: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagca ... ttgaaggcagTTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
EST: TTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAG TTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCAEST: gi|37833465|gb|BJ591477.1|BJ591477
genomic: TTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagca ... ttgaaggcagTTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
EST: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAG TTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCAEST: gi|67692339|gb|BJ952572.1|BJ952572
genomic: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagca ... ttgaaggcagTTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
EST: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAG TTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCAEST: gi|37836261|gb|BJ594269.1|BJ594269
genomic: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagca ... ttgaaggcagTTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
EST: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAG TTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
genomic: GCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagca ... ttgaaggcagTTCCGGGACTTTCTTGAGAGCCGACGAAGACACGACGCGGAGTTTGGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAGGCCATCATGAAGCTTGCAAGGACTCGTCTTGCTCCTTCTGCTCTGGCTTTGAGGAAAGGGGAGAGTGAAGACTCAACGAAAGACATCCGAACTAGgtgggtagcagttgcggtgttttgtggagtttgtgcaactttctgtaagatcgattggttcgactgtctactgaagatctcatgacatctactcggagagatgcttgctttcagaatttaggttctcgttactgtggttgtgatttgaaggcag
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