1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCGTGCGCATAACTTGTGGTTCGTGGAGTTAGATGCCGGTCTGTCTCCCTTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTGgtaagagctggcggattatttattttgtattgggtttttttctactttcatcgcattttttgttcgacttttctggtctagctgcgagggacattttctgattttgttaattaacctcag
species | Physcomitrella patens |
transcript | PP1S19_296V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTG GCCGGACTTGGTTCTATAAAGGGGACATGCACAAGGAAGTTTGCCAAGGATEST: gi|208367341|gb|DC951273.1|DC951273
genomic: TTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTGgtaagagctg ... ttaacctcagGCCGGACTTGGTTCTATAAAGGGGACATGCACAAGGAAGTTTGCCAAGGAT
EST: TTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTG GCCGGACTTGGTTCTATAAAGGGGACATGCACAAGGAAGTTTGCCAAGGAT
genomic: TTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTGgtaagagctg ... ttaacctcagGCCGGACTTGGTTCTATAAAGGGGACATGCACAAGGAAGTTTGCCAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTGCGCATAACTTGTGGTTCGTGGAGTTAGATGCCGGTCTGTCTCCCTTGGCCGAGAAAGGAGGCTGATATCATTCTATACTTCTAAAGCTTATTTGgtaagagctggcggattatttattttgtattgggtttttttctactttcatcgcattttttgttcgacttttctggtctagctgcgagggacattttctgattttgttaattaacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT