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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCCGGAAAAATTGACATTCTTGTTGCTGGCATTGGTACCGGTGGAACTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttagctatatcatatcagaattacatcttctattcatttatattaaaaacatttcttggttgtatcacatgactctgaaatatttgtatgggcctgaagactttcaagttagtttggcaatgcttactaatgttaatgtggctgttggtgtgaacgttgctgctttggtccacag

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268500|gb|FC444373.1|FC444373
EST:     CTGTAACTGGAGCTGGTCGTTAC-TGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208377588|gb|DC922691.1|DC922691
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67728207|gb|BJ978466.1|BJ978466
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208394494|gb|DC953533.1|DC953533
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162171168|gb|FC347782.1|FC347782
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37845880|gb|BJ603888.1|BJ603888
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTNAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18335316|gb|BJ167334.1|BJ167334
EST:     CTGTAACTGNAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162263267|gb|FC438555.1|FC438555
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37823802|gb|BJ581868.1|BJ581868
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67727983|gb|BJ978242.1|BJ978242
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208344999|gb|DC925409.1|DC925409
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGNTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162263268|gb|FC438556.1|FC438556
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18340053|gb|BJ172081.1|BJ172081
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208399703|gb|DC924901.1|DC924901
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162216431|gb|FC393264.1|FC393264
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18335899|gb|BJ167920.1|BJ167920
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67720467|gb|BJ970726.1|BJ970726
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18335231|gb|BJ167249.1|BJ167249
EST:     AAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: AAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67723616|gb|BJ973875.1|BJ973875
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162216430|gb|FC393263.1|FC393263
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162219191|gb|FC396630.1|FC396630
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208395218|gb|DC916027.1|DC916027
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67720311|gb|BJ970570.1|BJ970570
EST:     CTGTAACTGGAGCTGGTCGTTACTCGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37851880|gb|BJ609888.1|BJ609888
EST:     ACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: ACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162154236|gb|FC330367.1|FC330367
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCA
EST: gi|162164732|gb|FC340779.1|FC340779
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162278511|gb|FC453973.1|FC453973
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37834751|gb|BJ592763.1|BJ592763
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67698281|gb|BJ958514.1|BJ958514
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162277366|gb|FC453172.1|FC453172
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162278510|gb|FC453972.1|FC453972
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162219190|gb|FC396629.1|FC396629
EST:     CTGTAACTGGAGCTGGTCG-TACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162237880|gb|FC412507.1|FC412507
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162277367|gb|FC453173.1|FC453173
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37826715|gb|BJ584727.1|BJ584727
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18339112|gb|BJ171138.1|BJ171138
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67728189|gb|BJ978448.1|BJ978448
EST:     CTGTAACTGGGGCTGGTCGTTATTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37821669|gb|BJ579735.1|BJ579735
EST:     GGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGGAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: GGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|37833051|gb|BJ591063.1|BJ591063
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|67697830|gb|BJ958063.1|BJ958063
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|208381978|gb|DC923837.1|DC923837
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|18335080|gb|BJ167098.1|BJ167098
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
EST: gi|162273731|gb|FC449454.1|FC449454
EST:     CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAG                         ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA
genomic: CTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 28 (downstream exon)
Score: 34

TACAGCCGGAAAAATTGACATTCTTGTTGCTGGCATTGGTACCGGTGGAACTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttag ... tggtccacagATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACAGCCGGAAAAATTGACATTCTTGTTGCTGGCATTGGTACCGGTGGAACTGTAACTGGAGCTGGTCGTTACTTGAAAAGCAAGAATCCCAACGTTAAGgtgagtttagctatatcatatcagaattacatcttctattcatttatattaaaaacatttcttggttgtatcacatgactctgaaatatttgtatgggcctgaagactttcaagttagtttggcaatgcttactaatgttaatgtggctgttggtgtgaacgttgctgctttggtccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA