1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTTGACAGAGGCTCTATGTGGTTTCCGATTTCCTTTGGTTCACTTGGATGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattcctgaaaccgggaaaggcttccagggggtttcggtgtacaatttagctacttcaacataatttcattttccaatagtttatttttattttatttggtttactggttccatgtgtagacctttttgtaggttgacgtttttgtgtatttcgattgacag
species | Physcomitrella patens |
transcript | PP1S17_208V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|162268923|gb|FC446031.1|FC446031
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TTGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|162178563|gb|FC355015.1|FC355015
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|67569046|gb|BJ941870.1|BJ941870
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|162277166|gb|FC453388.1|FC453388
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|162268924|gb|FC446032.1|FC446032
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TTGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTTEST: gi|208373963|gb|DC944696.1|DC944696
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
EST: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAG GTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
genomic: TGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattc ... cgattgacagGTCAATTTAAGGCTATCAACGATGAGGGTATGCCTCATTACCAGAGGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTGACAGAGGCTCTATGTGGTTTCCGATTTCCTTTGGTTCACTTGGATGGAAGACAGCTTCTAATTAAGTCTGATGCTGGGGAGATCATCAAGCCAGgtattgattcctgaaaccgggaaaggcttccagggggtttcggtgtacaatttagctacttcaacataatttcattttccaatagtttatttttattttatttggtttactggttccatgtgtagacctttttgtaggttgacgtttttgtgtatttcgattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA