1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTACATTAGATCCTGGTGACAAGATATTGGACTGTCCACCCACATTCACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttttccaaaaattattctgtatattttgttacattctcatgaattttggttcactgctattatacttatgttcaaagttaatccttcgatttttttgtttcctttctcttaccaggatgtcgccgtcctttcctctatgactgatgccatctcttgtcttgaggatttcgcag
species | Physcomitrella patens |
transcript | PP1S175_129V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGT-GGATGTACEST: gi|162231926|gb|FC408792.1|FC408792
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTAC
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|37836183|gb|BJ594191.1|BJ594191
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|162223327|gb|FC400569.1|FC400569
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|208395168|gb|DC915977.1|DC915977
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGNTGACACCGEST: gi|100437874|gb|BY961539.1|BY961539
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGNTTGC-AGGGTTTGCGTTGGATGTACCTTCCATTGTTGACAEST: gi|100353475|gb|BY964825.1|BY964825
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGG-TTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACA
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTC-ATTTGT-GACACC
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATT-GTTGACACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACATTAGATCCTGGTGACAAGATATTGGACTGTCCACCCACATTCACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttttccaaaaattattctgtatattttgttacattctcatgaattttggttcactgctattatacttatgttcaaagttaatccttcgatttttttgtttcctttctcttaccaggatgtcgccgtcctttcctctatgactgatgccatctcttgtcttgaggatttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT