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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCAGCTTACCGACAACACTAAATTATCCATGCTCAGAAATGCCACTTGGACGCTCTCCAACTTTTGTCGTGGAAAACCTCAGCCTTCCTTTGAACAGgtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcag

Basic information

species Physcomitrella patens
transcript PP1S165_51V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_51V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G06720.2 (Arabidopsis thaliana), 5'ss of exon 5
CGCCCAGCTTACCGACAACACTAAATTATCCATGCTCAGAAATGCCACTTGGACGCTCTCCAACTTTTGTCGTGGAAAACCTCAGCCTTCCTTTGAACAGgtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcag
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CAATCAGCTTAATGAGCATGCTAAATTGTCCATGCTTCGAAATGCCACTTGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTCACTTTGACCAGgt--ctatttttttcccctcca-agcttgt-ttcgtcaatgtttatgtctagtattcttctaacatatgaagcatgtttaacag-----------------------------------------------------------------------------------