Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtaggaactcaatatttaactcgataaggattatttagatgtgaacttttattgatgttctctgtgttctatttgaagtgtaaatggtcatgtgatttatggccctccgacgtgttttgcag

Basic information

species Physcomitrella patens
transcript PP1S158_166V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S158_166V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os01g14440.1 (Oryza sativa), 5'ss of exon 4
CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtag-----gaactcaatatttaactc-gataaggatta---tttagatgtgaactttt------attgatgttctctgtgttctatttgaagtgtaaatggtcatgtgatt--tatggccctccgacgtgttttgcag-----------
||| ||| |||||||||||||||||||||| || || || || ||||| || || |||||||| |||||  | ||  | || ||||| || ||||| ||||||      | || | |    | |||  |||| || | |    | ||| ||  |   |         ||    |  | ||| |    |  | |        ||  | |||||  | |  |  |  ||   ||   | |            
CCAATGGAGGAAGTACGGTCAGAAGATGGCGAAGGGAAACCCTTGTCCACGCGCGTACTACCGCTGCACCATGGCCACCGGCTGCCCGGTGCGGAAGCAGgtaatgaccggacacgacgactcactgagatacgggtcaaaactcagaagtagagagtacgaagggctgggagtagcagtgctaccgtgtaggcaaggggtgttgtttgattggtctaactttgtga-acgtgacggaattgaccaacag

upper sequence: PP1S158_166V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA18G16170.1 (Glycine max), 5'ss of exon 3
CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtaggaactcaatatttaactcgataaggattatttagatgtgaacttttattgatgttctctgtgttctatttgaagtgtaaatggtcatgtg-atttatggccctccgacgtgttttgcag
||| ||| | || || || ||||| ||||| ||||||||||| || ||||| |||||||| || ||||||||| | ||    || || ||  | |||||||||   |   |  ||||  |     |     ||     |    |    |||| |  ||    | | |   |   || |   ||||| |    |  ||  ||                      
CCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGGAATCCGTGCCCTCGAGCATACTATCGATGCACTGTTTCTCCATCTTGTCCTGTGAGAAAACAGgtatacatatagaattttccagtgcattctctaaggtaacacaagagattatag--gtcacatatataaaaggagaggatgaaatgtttgcatacatacata---------------------

upper sequence: PP1S158_166V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT4G01720.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtaggaactcaatatttaactcgataaggattatt-tagatgtgaacttttattgatgttctctgtgttctatttgaagtgtaaatggtcatgtgatttatggccctccgacgtgttttgcag
 || ||| | || ||||||||||| ||||| ||||||||||| |||||||| || || || ||||||||  | ||   ||| || || || || ||||||||  | | | | ||| ||  |    ||   ||||  ||  | |  |     |    || | |  |  || | | |  | |   || |   || |  | | |||  ||                
TCAATGGAGAAAATACGGTCAGAAAATGGCGAAAGGGAATCCATGTCCTCGCGCTTATTATCGTTGCACCATGGCCGTTGGATGTCCTGTCCGTAAACAGgttagta-taactatatatatgagaaaatgttatcataattatagaaaaaaaaatttggtattagaattttgtattgatt---aacg--tatatagtat-tggttct----------------

upper sequence: PP1S158_166V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtaggaactcaat-atttaac---tcgataaggattatttagatgtgaacttttattgatgttctctgtgttctatttgaagtgtaaatggtcatgtgatttatggccctccgacgtgttttgcag
 || ||| | || || || ||||||||||| ||||||||||| ||||| || ||||| ||||| |||||  | ||  | || || || ||||| ||||| ||| ||  | ||  |||||||   | ||  |  |   | | | ||| ||     |||   | | ||  |||     |    | || | |||  |     ||    |  |    | |   |||  ||
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaac--attagagatttcaatgtatatatgtttgcgtgattggctaatacgttc---ggtccgaaatgatatttatag