1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACACCTTGTATCACGGATTGTGTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatgactgcaactaggtttaattgcctgttactgcttatttgcttatttgttgatttattttgatgcgtatgtcgtttctgtcttactagtgtta...
species | Physcomitrella patens |
transcript | PP1S153_101V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|37822267|gb|BJ580333.1|BJ580333
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|100365650|gb|BY948205.1|BY948205
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|208383700|gb|DC928031.1|DC928031
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|37827579|gb|BJ585591.1|BJ585591
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|18348287|gb|BJ180334.1|BJ180334
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|208356397|gb|DC914287.1|DC914287
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|208400155|gb|DC904803.1|DC904803
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|162206440|gb|FC383433.1|FC383433
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: TAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|208370447|gb|DC952150.1|DC952150
genomic: TAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|208354670|gb|DC918696.1|DC918696
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|37823705|gb|BJ581771.1|BJ581771
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTACEST: gi|100416555|gb|BY975445.1|BY975445
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
EST: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAG GGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
genomic: GTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatga ... tttttggcagGGTTGCTAAGGATCCACGATTTGAAACATTGCCTTGCACTCACAAGGGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACACCTTGTATCACGGATTGTGTGATGGCCGAATTAGAGAAATTGGGTCAGAAGTATCGCGTCGCTTTAAGgtgcatatgactgcaactaggtttaattgcctgttactgcttatttgcttatttgttgatttattttgatgcgtatgtcgtttctgtcttactagtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT