1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTGGTTGCATTATTGGAACAGGGACAAACGCATGCTATGTCGAACGTGCCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatttcgccgcatttctcggtttgtaggcacctgagcaggaaatcatgctaacaaacgtcttcaaatgggtgatttgctgacgatcattgagtatatgagcagttttttccttacattttgttattacgtgtggcag
species | Physcomitrella patens |
transcript | PP1S150_124V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACAEST: gi|162154067|gb|FC330302.1|FC330302
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACAEST: gi|162186018|gb|FC361846.1|FC361846
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACAEST: gi|100390444|gb|BY952852.1|BY952852
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAGATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACAEST: gi|162165557|gb|FC340668.1|FC340668
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACAEST: gi|162248551|gb|FC425327.1|FC425327
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
EST: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATG GTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
genomic: CCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatt ... cgtgtggcagGTTATCAATATGGAATGGGGAAATTTCCGTTCACCCTACCTGCCACGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGTTGCATTATTGGAACAGGGACAAACGCATGCTATGTCGAACGTGCCGATGCTGTACATAAGTGGGACGAGCCACTGCCCAAATCAGGAGAAATGgtaatcgatttcgccgcatttctcggtttgtaggcacctgagcaggaaatcatgctaacaaacgtcttcaaatgggtgatttgctgacgatcattgagtatatgagcagttttttccttacattttgttattacgtgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA