1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTGTACGTGGTCGAGGGCATGCAGTTTGACAGAGGCTACATTTCCCCCTATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcctattatttttaagaatgcctttggatgtttatctgcttgtgacatcgcttgaaagcggaatctgcgtgcaattacaaactgctgaccgaca...
species | Physcomitrella patens |
transcript | PP1S14_298V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162246717|gb|FC422710.1|FC422710
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162203804|gb|FC379901.1|FC379901
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162195954|gb|FC372151.1|FC372151
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162170824|gb|FC347438.1|FC347438
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162157418|gb|FC333195.1|FC333195
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162187436|gb|FC362658.1|FC362658
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162193667|gb|FC371246.1|FC371246
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162173847|gb|FC349439.1|FC349439
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162158432|gb|FC334227.1|FC334227
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162195933|gb|FC372143.1|FC372143
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162255992|gb|FC431756.1|FC431756
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162175554|gb|FC350972.1|FC350972
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162227587|gb|FC403529.1|FC403529
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|208362500|gb|DC939480.1|DC939480
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162158158|gb|FC333953.1|FC333953
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATTEST: gi|162149659|gb|FC326710.1|FC326710
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
EST: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGG CTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
genomic: ATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcct ... gcgcgtgcagCTTCTCCTGGTGGATAAGAAGATCGTAACTGCCCGTGACATGATTGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTACGTGGTCGAGGGCATGCAGTTTGACAGAGGCTACATTTCCCCCTATTTTGTGACTGACCCAGAGAAGATGTCTGTGGAGTATGATAACTGCAGGgtatgctcctattatttttaagaatgcctttggatgtttatctgcttgtgacatcgcttgaaagcggaatctgcgtgcaattacaaactgctgaccgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG