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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCACTCTCACATCTAGCAAGCAATGCACAACAAAGAAATACACTTACAAAGCCTGAGTTTTTGGATATGGTTCCTTGGTATTCAGGgtatagtttctactcctcaaatttcctagtatgtttgtgtatttgcaccatacattatactgtatatattttatttttttatttttttaaaaattgtagaatgatttgctctagagtatactctccatgttgaagtgtgcggggttgagcttggttgttgtggtag

Basic information

species Physcomitrella patens
transcript PP1S147_29V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGGGCACTCTCACATCT------AGCAAGCA---ATGCACAACAAAGAAATACACTTACAAAGCCTGAGTTTTTGGATATGGTTCCTTGGTATTCAGGgtatagt--ttctactcctcaaatttcctagtatgtttgt-gtatttgcaccatacattatactgtatatattttatttttttatttttttaaaaattgtagaatgatttgctctagagtatactctccatgttgaagtgtgcggggttgagcttggttgttgtggtag
 ||||| ||  ||||||       ||    ||   |||   | |  |  |||   |     || ||||| || || |||||||||||||||||||||||||||     | |||| |   || || ||   | || ||    |  || ||   |      ||    ||  |     |||   ||  |  |    |  | |  ||| || |  |  ||                                                    
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgctacactaaaatttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggcagtttcactaggtgct---gacctatctaattatatatttcag----------------------------------------------------

upper sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGGGCACTCTCACATC---------TAGCAAGCAATGCACAACAAAGAAATACACTTACAAAGCCTGAGTTTTTGGATATGGTTCCTTGGTATTCAGGgtatagtttctactcctcaaatttcctagtatgtttgtgtatttgcaccatacattatactgtatatattttatttttttatttttttaaaaattgtagaatgatttgctctagagtatactctccatgttgaagtgtgcggggttgagcttggttgttgtggtag
 ||||||||  |||| |         | | ||   |||   |    |  |    ||  |  || ||| | || || ||||||||||||||||||||||||||  || | | |      |  ||  |  | | |   | | || ||| |   || | |  | | || | |    |  ||    |       |  |||   ||  | |  |  ||                                                    
GTGGGCACTGGCACACCCTCTGTCTGTCGAAAATTATGAGAAGTTGAAGAGACAACAAATGAAACCTAATTTCTTAGATATGGTTCCTTGGTATTCAGGgtac-gtctatgccaactgatcttttttctttttacatattttagcatctaccaatgtcttctttaaagtaggatacttgggct------gatctgtctgattttctatttcag----------------------------------------------------

upper sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 6
ATGGGCACT--CTCACATCTAGCAAGCAATGCACAACAAAGA-------AATACACTTACAAAGCCTGAGTTTTTGGATATGGTTCCTTGGTATTCAGGgtatagtttctactcctcaaatttcctagtatgtttgtgtatttgcaccatacattatactgtatatattttatttttttatttttttaaaaattgtagaatgatttgctctagagtatactctccatgttgaagtgtgcggggttgagcttggttgttgtggtag
|||||| ||  |||||   | |  ||  |   |  |  | ||       || |  |  |  |||||||| || ||||||||||| ||||||||||| |||||||        |  ||||  ||| |  | | |||   ||||         | || |  | |||  |    |     ||| ||    | ||| | |    | | | | |    | | | ||| |  ||  || |  || |  |  |                   
ATGGGCTCTTACTCACCCTTTGTCAGTTAAAGATTATGAGGAGTTGAAGAAAAAGCAAATGAAGCCTGATTTCTTGGATATGGTCCCTTGGTATTCGGGgtata--------tgttcaatattcgtcatttatttagttatt---------cctttttttttatgaagaggagggggttagttggaaagaaaatctcagttaactagtt---aactgtcctcactttgccgatgcttgtgttgcag-------------------