1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAGAAGGTGGAGCAGTTTTGTATTACCAGCCCTAATGACGACGAATCTTGGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaattatattactctcacttggcgatgatgattatgataatgacgaatttagcagaaatcgcttgcgaagaacaatctggttataacaacgttct...
species | Physcomitrella patens |
transcript | PP1S142_120V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGATGCACGANGAAATGTTGAAGAATTCAGAAGACTTCTANCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|162204299|gb|FC380487.1|FC380487
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|67724461|gb|BJ974720.1|BJ974720
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCAT--TCTCTGGAGCACTTAACGATEST: gi|208353284|gb|DC926167.1|DC926167
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTNTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|67697454|gb|BJ957687.1|BJ957687
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|162204300|gb|FC380488.1|FC380488
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|37839193|gb|BJ597201.1|BJ597201
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACCAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAEST: gi|208368352|gb|DC955535.1|DC955535
genomic: GAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAA-CAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGA
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGATEST: gi|37838367|gb|BJ596375.1|BJ596375
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
EST: GAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACCAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAEST: gi|67725840|gb|BJ976099.1|BJ976099
genomic: GAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAA-CAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGA
EST: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAG TTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
genomic: GGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaatt ... tgttttgcagTTGGGTCTTCCTTATCGAGTGGTATCCATCGTCTCTGGAGCACTTAACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAGGTGGAGCAGTTTTGTATTACCAGCCCTAATGACGACGAATCTTGGAAGATGCACGAAGAAATGTTGAAGAATTCAGAAGACTTCTACCAACAGgtaccgaattatattactctcacttggcgatgatgattatgataatgacgaatttagcagaaatcgcttgcgaagaacaatctggttataacaacgttct
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaacaa