1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGCCCATCAGAAGAAAGGACGATTGAACTTAGTTTGATTGCTGAGAAGACCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccccacttaaatggaatgccaatttcctttcaattcctatgttaagattctccaattattttcatattttgtgcgtgttgtatttgttcattc...
species | Physcomitrella patens |
transcript | PP1S131_74V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|37821760|gb|BJ579826.1|BJ579826
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162251835|gb|FC426943.1|FC426943
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162265639|gb|FC441095.1|FC441095
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|208374842|gb|DC956115.1|DC956115
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162243863|gb|FC423180.1|FC423180
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|208344424|gb|DC916761.1|DC916761
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|37831001|gb|BJ589013.1|BJ589013
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162230348|gb|FC406912.1|FC406912
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAACAEST: gi|162243433|gb|FC425129.1|FC425129
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162265640|gb|FC441096.1|FC441096
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|208359725|gb|DC946601.1|DC946601
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162243434|gb|FC425130.1|FC425130
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGEST: gi|208392191|gb|DC957270.1|DC957270
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGG
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATTAGGTCGATGGAACAGTGCGAATAEST: gi|208357810|gb|DC918600.1|DC918600
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATAEST: gi|162250854|gb|FC426898.1|FC426898
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
EST: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCT GTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
genomic: CCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccc ... cattttgcagGTACATTTGATCGAGGGTGTTATTGATCAGGTCGATGGAACAGTGCGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCCATCAGAAGAAAGGACGATTGAACTTAGTTTGATTGCTGAGAAGACCAAGCTGTCACTGGATGAAGTGGAGCATCTTTTGATCAAGAGCTTATCTgtatgtgccccacttaaatggaatgccaatttcctttcaattcctatgttaagattctccaattattttcatattttgtgcgtgttgtatttgttcattc
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT