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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCTCGAGTGCGTTCCATCTCCTATTGCGGCAGCTGTTACATCCGCACTTAAAATTCCCACCATTGGGATTGGTGCTGGCCCTTTCTGTAGTGGCCAGgtagtacgtctctcataacctttctcttttccttcacccatgcttgtcgacacttgccaatcaagcctgttttggcagcatttggggctttctttgtggttgattttaatttctaagtttttgtttgtttgtttgtttgtttgtttgttttaatgtgttttacag

Basic information

species Physcomitrella patens
transcript PP1S130_272V6.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S130_272V6.4 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G010596_T01 (Zea mays), 5'ss of exon 3
CGTGCTCGAGTGCGTTCCATCTCCTATTGCGGCAGCTGTTACATCCGCACTTAAAATTCCCACCATTGGGATTGGTGCTGGCCCTTTCTGTAGTGGCCAGgtagtacgtctctcataacctttctcttttccttcacccatgcttgtcga--cacttgccaatcaagcctgttttggcagcatttggggctttctttgtggttgattttaatttctaagtttttgtttgtttgtttgtttgtttgtttgttttaatgtgttttacag
 ||| | ||||| || ||  ||||  | || |||||||  ||||| ||| | ||||| || |||||||| ||||| ||||| || |||||||||||||||||    ||| | |     | || |||  |    | |         ||     |||||||    |   |   |  ||  |   |    |   ||   | ||||    |  |                                                         
TGTGTTGGAGTGTGTGCCTGCTCCAGTGGCAGCAGCTGCAACATCAGCATTGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgtt---cgtttgtt----ctttgctccgtaaaatgaggaggagaagtaagatcacttgctttgctcacagatactgaga---tacaagatgttgactctggtcatatcca---------------------------------------------------------

upper sequence: PP1S130_272V6.4 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G61530.1 (Arabidopsis thaliana), 5'ss of exon 3
CGTGCTCGAGTGCGTTCCATCTCCTATTGCGGCAGCTGTTACATCCGCACTTAAAATTCCCACCATTGGGATTGGTGCTGGCCCTTTCTGTAGTGGCCAGgt-------agtacgtctctcataaccttt--------------ctcttttccttcacccatgcttgtcgacactt--gccaatcaagcctgttttggcagcatttggggctttc------tttgtggttgattttaatttctaagtttttgtttgtttgtttgtttgtttgtttgtttta-atgtgttttacag------
 ||  | || || |||||| ||||| | || || ||||  || || || ||||| ||||| |||||||| || || |||||||||||||| ||||| |||||         |||   |  |||   |||               ||  ||||  |  |   ||||| |  |   ||      |  || ||  | ||  |||   ||||   |||       ||   |  | |  | |      ||    |   || | |   | | || |    | | | | || | | ||   |      
TGTTTTAGAATGTGTTCCACCTCCTGTGGCTGCTGCTGCAACCTCTGCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGgttcgttttgatactctttacattgtcttaacgagagcaataggcttctttcggtttcatgtgcttatacatggtttgattgaataaacc-atattctcagttattggcctttttgcatgattaaagagtaagatcagcacaaaaagagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208363937|gb|DC950341.1|DC950341
EST:     TCTGTAGTGGCCAG                         GTCTTGGTGTACCATGATCTTTCTCGGTATGATGCAACACCCCCATTTCGT
genomic: TCTGTAGTGGCCAGgtagtacgtc ... tgttttacagGTCTTGGTGTACCATGATC-TTCTCGGTATGATGCAACACCCCCATTTCGT