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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACATGAAGCAGCTTCTCACCGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgtaagttgtacggtttttcagctgaaccagctttccattgattaggaataacagtccttttgtattaatcttggtttagatctatcaagtcatatcttacctacttgtggattttctgatatctctttttcag

Basic information

species Physcomitrella patens
transcript PP1S121_162V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S121_162V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 5
TGTTACATGAAGCAGCTTCTCACCGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgta--agttgtacggtttttcagctgaaccagctttccattgattaggaataacagtccttttgtattaatcttggtttagatctatcaagtcatatct--tacctacttgtggattttctgatatctctttttcag
||||||||||||||||| || || || ||||| || || || |||||||||||| ||||  | |||||||||||||  || ||| |    | || ||||      | ||   ||  |||          || |||| | ||  ||||| |   || ||| ||  |  ||| |  ||| |  |||| |                       
TGTTACATGAAGCAGCTGCTTACAGGCCTACACTATTGTCACGTCAACCAAGTCCTGCATCGAGACATCAAGGgtattagctgtgca-catctctgctgggttttccttgttttccttat---------tcattttat-ttgttcttgtt---gagctaacatattgtatttgatactttgttgtag-----------------------

upper sequence: PP1S121_162V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ31297 (Selaginella moellendorffii), 5'ss of exon 5
TGTTACATGAAGCAGCTTCTCACCGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgtaagttgtacggtttttcagctgaaccagctttccattgattaggaata-acagtccttttgtattaatcttggtttagatctatcaagtcatatcttacctacttgtggattttctgatatctctttttcag
||||| |||||||||||||||||||| ||  | ||||| ||| ||||||||||  | ||  |||| ||||| |||   |||      || |   | |  || |  |    ||   | |   |   |||                                                                               
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgtcc-ttgagtttattcttgtcagtgcctggctgaagttttgtggatttgcgcag-------------------------------------------------------------------------------

upper sequence: PP1S121_162V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ34303 (Selaginella moellendorffii), 5'ss of exon 4
TGTTACATGAAGCAGCTTCTCACCGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgtaagttgtacggtttttcagctgaaccagctttccattgattaggaata-acagtccttttgtattaatcttggtttagatctatcaagtcatatcttacctacttgtggattttctgatatctctttttcag
||||| |||||||||||||||||||| ||  | ||||| ||| ||||||||||  | ||  |||| ||||| |||   |||      || |   | |  || |  |    ||   | |   |   |||                                                                               
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgttc-ttgagtttattcttgtcagtgcctggctgaagttttgtggatttgcgcag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159147|gb|FC334318.1|FC334318
EST:     CGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGG                         GTTCAAATCTTCTTATCGACAACAATGGAATTTTGAAGCTTGCTGATTTTG
genomic: CGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgtaagttgta ... tctttttcagGTTCAAATCTTCTTATCGACAACAATGGAATTTTGAAGCTTGCTGATTTTG
EST: gi|162171355|gb|FC347254.1|FC347254
EST:     CGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGG                         GTTCAAATCTTCTTATCGACAACAATGGAATTTTGAAGCTTGCTGATTTTG
genomic: CGGGCTACATTACTGCCATGTCAACCAAGTCTTGCACAGGGACATCAAGGgtaagttgta ... tctttttcagGTTCAAATCTTCTTATCGACAACAATGGAATTTTGAAGCTTGCTGATTTTG