Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCGAGGCTTGGACTCAACAAGAGGATTTGGCATTGATCCGTGCTCATCAACTATATGGAAACAAGTGGGCTGAAATCGCCAAATATTTGCCGGGGCGgtaattatttgattttttcctacctgagaaatagattttgttcttccacttccatgcacagccgaagtctaaattggcggacacttatcattgatccttactataatttttgttgtacccatccggacttttgcag

Basic information

species Physcomitrella patens
transcript PP1S120_159V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S120_159V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv04s0008g03780.t01 (Vitis vinifera), 5'ss of exon 6
AGCGCGAGGCTTGGACTCAACAAGAGGATTTGGCATTGATCCGTGCTCATCAACTATATGGAAACAAGTGGGCTGAAATCGCCAAATATTTGCCGGGGCGgtaattatttgattttttcctacctgagaaatagattttgttcttccacttccatgcacagccgaagtctaaattggcggacacttatcattgatccttactataatttttgttgtacccatccggacttttgcag
|    ||||| ||||||||| |||| || ||||||||| | |||||||||||  ||||||||||||||||||| ||  |  | ||||  ||||||||  ||||  | ||  ||   ||  |    ||||   | ||  | | | || | ||  ||   |  | |||   ||  |||        || | ||    |    || |  |                             
ACAAGGAGGCATGGACTCAAGAAGAAGAGTTGGCATTGGTTCGTGCTCATCAGATATATGGAAACAAGTGGGCAGAGTTGACAAAATTCTTGCCGGGAAGgta--tgttc-atccattattgaaggagagg-aaatactttgcatc-atttttat---cttctgaaaattatgttgtttatattttcttatctgcctggtctgttgtg----------------------------