1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACACCTTGTATCACAGATTGTGTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcaccttcatttcattggcaatggtgtgtagtgaatgagtcgcttgtctagtcagcatttttggatgcatgttgctaattcctagtagtttaaa...
species | Physcomitrella patens |
transcript | PP1S11_99V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAG GGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTACEST: gi|208384565|gb|DC907066.1|DC907066
genomic: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcac ... tatttggcagGGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
EST: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAG GGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTACEST: gi|208348150|gb|DC920941.1|DC920941
genomic: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcac ... tatttggcagGGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
EST: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAG GGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTACEST: gi|208397157|gb|DC908171.1|DC908171
genomic: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcac ... tatttggcagGGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
EST: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAG GGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTACEST: gi|208387835|gb|DC941404.1|DC941404
genomic: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcac ... tatttggcagGGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
EST: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAG GGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
genomic: GTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcac ... tatttggcagGGTTGCAAAGGATCCGAGATTTGAAACGCTGCCTTGCACTCACAAGGGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACACCTTGTATCACAGATTGTGTAATGGCTGAGCTGGAGAAATTGGGTCAAAAATATCGAGTTGCTTTAAGgtgccttcaccttcatttcattggcaatggtgtgtagtgaatgagtcgcttgtctagtcagcatttttggatgcatgttgctaattcctagtagtttaaa
- - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - GGAGAA