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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta...

Basic information

species Physcomitrella patens
transcript PP1S11_55V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtga-gtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
||| || ||||||||    |||||||||||||| || || |||||||| || || || ||||| ||||||||||| || || || ||||| |||| ||||||  |||   | || |    |    ||| || |  |||    |   |    ||  | | |||   ||   |   |  ||  |                   
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagttt-ttgtgtaatataccatagacagcctttggttctgttgtgatgtattaattaatgcag-------------------

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G365185_T01 (Zea mays), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
|||||| ||  |||| |  ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| |||||  ||||||||||   |||||| |  || ||| ||  |  ||  |||   ||| |   | |  || |   | || |  || |  ||  |                               
CAATCCAAACTCCTTTACCAGTGCAGATACTGCATATGTTCTTGCTTATTCTGTAATCATGCTCAACACTGATGCTCACAATACTATGGTCAAGGATAAGgtaaacaa-atgataataa-gcatatt---tgattcaagattagtttatttatgagatttccaatgtgcag-----------------------------

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgt-cagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
 ||||| ||||||||    |||||||||||||| || || || ||||| || || || ||||||||||| ||||| || ||||| |||||||||| |||||| |  |  | || |  |    |   ||||| |||| | |||   |   |   | ||||     || |||  | | | |                      
TAATCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTTCTGGCTTATTCAGTCATAATGCTTAACACTGATGCACATAACCCAATGGTCAAAAATAAGgtactttcttgtggtgaaggttctt-ttgcg-gagttctggtt--tacacaattatgtaacatgttactc--gatgcag----------------------

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G092586_T01 (Zea mays), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctctta-cattgttgcgtta
|||||| || || || | |||||||||||||||||| || ||||| || ||||||||| |||| ||||| ||||| || || || ||||| || |  |||||     |||  |  || |     ||     | | |    ||  | |       | || |  |||     |      | |  ||| |   || ||| |   
CAATCCAAATGCTTTTATTAGTGCAGATACAGCATATGTTCTTGCATATTCTGTGATCTTGCTAAACACTGATGCTCATAATCCAATGGTGAAGAACAAGgt-----atacttatgattttattatcatacgggaa----tgtctataaagaaatttagttttttaactctatcaaaggtaatctaagttttcttgtgcag

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta-----
 ||||| || | |||   |||||| ||||||||||| || ||||| || ||||||||  ||||||| |||||||||||||| |||||||| ||||  |||||  | | | ||| |          |||  |   | |   ||  | ||  | ||   |||  | |     |  |   |||  | ||   ||| || ||||     
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgt--gcagtctgtcaattctagaagttgatt---ttcatatgattatgattatg---attattatatatgtaatgaggttcttttttgtttgctgagttatgcag

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattg-cgtgagtacgggtgcgtgtgcg-tgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
 ||||| || | |||   |||||| ||||||||||| || ||||| || ||||||||  ||||||| |||||||| ||||| |||||||| ||||  |||||  |   | ||| |          |||   |   || |  || |  |  | | | |||| ||   | || || ||||  |   |  | ||           
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATTCTGCTTAATACCGATGCTCACAATCCTATGGTGAAAAACAAGgt--gcggtctgtcaattctagaagttgattttcatatgattgtgattatgatatatgtaatgaggttctttttgttcattgagttatgcag----------

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA14G00230.1 (Glycine max), 5'ss of exon 5
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtg---cgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
||| || |   | || || ||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||| || ||   |||||| |||  ||||||   | |  |    |||||    ||    ||  |  || |     ||  | ||    |  |||      |  | | | |            | ||| |||| 
CAACCCTAGTTCTTTTAGCAGTGCAGATACTGCCTACGTTCTTGCTTACTCTGTGATAATGCTTAATACAGATGCTCATAATAATATGGTGAAAGATAAGgtt--tgaccttgctgaatcttttatatgatgtcttaggctcaacagttagagtaccagctttgtgacattacttgatgtccaatctagttgtagtttcgtt-

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtg---cgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
||| || |   | || || ||||||||||| || ||||| || |||||||||||||| |||||||| || ||||| || ||    ||||| |||  ||||||   | |  |    |||||    ||    ||  |  || |    |||  | ||    |  |||      |  | | | |            | ||| | || 
CAACCCTAGTTCTTTTAGCAGTGCAGATACTGCCTACGTTCTAGCTTACTCTGTGATAATGCTTAATACGGATGCTCATAATAACATGGTGAAAGATAAGgtt--tgaccttgctgaatcttttatattatgtcttaggctcaaccgttagagtaccagctttgtgacattacttgatgtccaatctaggtgtggtttcatt-

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatat-----gttagaatc-gcgcattgcgtgagtacgggt-----gcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta------------------------------------------------------------------------------------
|||||| ||  | ||||| ||||| || |||||||| || ||||| |||||||| || ||||||||||| |||||||||||    ||||| |||   |||||  ||  | |     || | |||     || | | ||| |    |      | ||||  | |  ||| ||   ||  | | | |  |  ||  || | |   |||| ||                                                                                     
CAATCCAAATTCATTCAGCAGTGCTGACACAGCATATGTTCTTGCATACTCTGTAATAATGCTTAACACTGATGCCCACAATATCATGGTTAAAGAGAAGgtttgtcttcttggctgtcacaatttattcaatccatgactgatagcttttggagtgtatgggcatgtgttaactt-ttttggctatttctgtgctcagaaaattgcttttgaaatattctaaattggagatgctttttggtgtaaaggtctttacagtgtatttaacgtctgctttctggtttatgacaatcag

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgt------cagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgt--gtgtattgctttgctcttggttctgttgctcttacattgttgcgtta
 ||||| ||||  || | ||| |||||| |||| || || ||||| || |||||||||||||| || || |||||||||||||| ||||| || |  |||||      || | ||    ||| ||    || |   || | | |  |  |      |||  |||   | |||||  | |  || | || |||||  |   |   |   
TAATCCTAAGGTGTTTACTAGCGCAGATTCAGCTTATGTTCTTGCATATTCTGTGATCATGCTCAATACTGATGCCCACAACCCCATGGTGAAGAACAAGgtttgcttcattcattgtctaggataatacagttattgtggaagttttaggtaaaatgttagtgacgttctttgtgcctttttttttttctcttggaacatatag---

upper sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 4
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta-------
|||||| ||  | || |  ||||| ||||| || || || |||||||||||||||||  |||| ||||| |||||||||||    ||||| |||  |||||| ||       || ||        ||   ||  | |     |        |  |  |  |   |||  |||   ||  || |  || |||  |   |||       
CAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGgtgagc------ttggagaattttcttatttgtcttctaccccacacttaggcttacaa-gtcatgcctttgtgcctaatgtttgtagattagttttttaaggggga