1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAGCAATCCGTCTGCCCTTCGGGAGACAGTGGTTGAGGTGCCGAATACTACCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAGgtattctatatgttttggtttttgacgtgaaagcttatctaaaactcggaacgcacagcttcgagttcgattttgagctatagattggacaattcagtac...
species | Physcomitrella patens |
transcript | PP1S115_6V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAG ACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATGEST: gi|162157199|gb|FC332833.1|FC332833
genomic: GACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAGgtattctata ... cccttggcagACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATG
EST: CCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAG ACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATGEST: gi|100425753|gb|BY977103.1|BY977103
genomic: CCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAGgtattctata ... cccttggcagACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATG
EST: CCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAG ACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATG
genomic: CCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAGgtattctata ... cccttggcagACTGTGCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAATCCGTCTGCCCTTCGGGAGACAGTGGTTGAGGTGCCGAATACTACCTGGGAGGACATTGGGGGTCTGGAGAATGTCAAGCGGGAGCTTCAGGAGgtattctatatgttttggtttttgacgtgaaagcttatctaaaactcggaacgcacagcttcgagttcgattttgagctatagattggacaattcagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT