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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAAACTTTAGAAGGTGCAGCTTGTGGATTAAGTGCATCAGTTGCTGTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAGgtatgagtatgttcccaagttattttctagaattatatattctcagtaatagtcaaaatgcgttgtcaacagtttgaaaatcgtagttttctgtccatgt...

Basic information

species Physcomitrella patens
transcript PP1S113_85V6.5
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223253|gb|FC400534.1|FC400534
EST:     GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAG                         TGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT
genomic: GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAGgtatgagtat ... attcatgcagTGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT
EST: gi|162223254|gb|FC400535.1|FC400535
EST:     GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAG                         TGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT
genomic: GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAGgtatgagtat ... attcatgcagTGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT
EST: gi|162267220|gb|FC442632.1|FC442632
EST:     GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAG                         TGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT
genomic: GTGTCAGTGGTGCTTGGACTTCTCTTTCAATGGCCCATGTCCTCTTCCAGgtatgagtat ... attcatgcagTGCGATGGTATTGGCACTACTTGTTTTTCTGGGGTCGCTCTTTGGTGACCT