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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag

Basic information

species Physcomitrella patens
transcript PP1S107_15V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os02g45600.1 (Oryza sativa), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgta---tagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||||||||| || ||||| ||||| ||||| |  ||    ||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||||       |  | || || ||   | | | | ||||    ||| | || ||      || | |  |    |   ||  ||    |  |||    |||  |                                                                                               
TTGGGCCATCAATCTGATGGCAGATGTTGTGGAACATGAAAACTACAATAAGATGAACGCTCGCAACATTGCTATGGTTTTTGCACCAAACATGACTCAGgttattctcaaaatctatttggctttatttattttttcttgcta-tctacagaatttgctatttcacagactaa-tcatgtaacataccatctcttttatag----------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgta-tagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 |||||  | ||  | ||||| ||||| ||  |    ||       ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||| |  |    |       |   ||  |  |||| |   | ||  |    ||      || | | | |    | | |                                                                                                                    
GTGGGCAGTTAATTTAATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAATGCTCGTAACATTGCTATGGTTTTTGCACCAAATATGACTCAGgtaatgcactgtcctaataataaacttatgattttaagtgtggtcgatgcttactgtcatgca-catatgtaatgcag--------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os04g48790.1 (Oryza sativa), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||| ||||| || ||||| ||||| |||||||  ||    |||||||||||||||||| | ||||| |||||||| ||||| || |||||||| |||||||     ||  ||    |||  |||||| || ||||    |  | |   |  |   || |  || |||| | ||                                                                                                                     
TTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGgtattagaaacaactc---tggattctttcgttagaaaagcatacacatacactaacctgcaatgt-ttgttttccag-------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
||||||  | ||  | ||||| ||||| ||  |    |||      |||||||||||||| ||||| ||||| ||||||||||| || || ||||| ||||||  | |     ||   | | ||   |  |  ||| | |   ||||   |  |      || | ||||||| | | |||  |                                                                                                              
CTGGGCTGTTAATTTGATGGCTGATGTTGTCCAAGAAGAGCAAATAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCAAATATGACTCAGgtagtgtgttatcctattgcgatca--tggtactgatatttcattagg--tggattc---taac-tgttgtcacacatgtaatgcag----------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os12g34840.1 (Oryza sativa), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 |||||  |  | || ||||| || || || ||   ||||      ||||||||||||||| | ||||| || ||||| ||||| || |||||||| ||||||   | | ||  ||| ||  |    ||     |  |  || | |          |  |||| ||| | ||| | ||  |||| |   |     | || | | |   |  |    | || |||||| || | |  | | | |                                                  
TTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGgta---atctccatttctgtaat----tttgcaggggatcaggtga----------tacgtag-gtgat-tcttcagtactttccct--acaaaagaacctgactgaggttt----gctcttttgtttttgggttctatgctag-------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G044495_T01 (Zea mays), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtct--cccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||||||||  |||||||| ||||| |||||    ||    |||||||||||||| ||||||||||| ||||||||||| || ||||| |||||  ||||      ||        |     |  ||  | | |   ||  ||    ||    ||    |    || ||||  ||   |     ||||    ||                                                                                                   
ATGGGCCATCAGTCTCATGGCAGATGTCGTGGAAAACGAAAGCTACAACAAGATGAACGCTCGCAACATCGCTATGGTTTTCGCACCGAATATGACCAAGgttactgaca-------agcatatttgtttctctcagcgtaccttttttctctctcttcaaaatccgtagtctaaccacggagcattcatccctttcag------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G323936_T01 (Zea mays), 5'ss of exon 3
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttg---cacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 |||||  || | || ||| | ||||| || ||   ||||     |||||||||||||||| | ||| | || ||||| ||||| || |||||||||||||||     |   | || |  ||  |    || | | |  |  |  | |   | |    |||| | | |  |    |    || |     |||| |    |||  |  |||| |  | ||  |   || || ||  |   |||| |                                                   
TTGGGCTGTCGAGCTGATGTCTGATGTTGTCGAAGAGGAGGAGCTCAACAAGATGAATGCTAGGAACGTAGCCATGGTGTTTGCCCCCAACATGACACAGgtagtttactattatt-gcaggcataggactataggaggtgttccatatgcaca----tgta-cttctcatacaacaaaattgcgagaaatctgtagatcaccctgcttcaacagctaaatttacttttttttgttctatgttag---------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G136069_T01 (Zea mays), 5'ss of exon 3
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactag---tttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacat-tatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|| |||  | || || ||||  ||||| ||  ||   ||       ||||||||||||| || ||| ||||||||||||||||  || || | ||| ||||||| |  ||         |  | |     ||   |||||||   | || | || |  | | | || |    |  |    ||  | || |  ||      || |  | | |||                                                                                    
CTAGGCTGTTAATCTGATGGATGATGTAGTCCAGGAAGAACAGATAAACAAGATGAATGATCACAATATTGCTATGGTTTTTGTGCCAAATACGACTCAGgtattg--cattgtgctaatattgtagcaattagcaaactagcaatatatacctcaccccgagcagtggaacggtt---atgcgtgctaactattagcaaacttacaatgcag------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgt-gttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||||| |||||  | ||||| || || || || |  ||    | |||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||| |||   || |  |  |              | ||  |   ||    ||     ||| ||  || | | |||| |      | | || |   |      ||| || | | ||                                                                                
CTGGGCAATCAATTTGATGGCAGACGTTGTTGAACATGAACAGTTCAACAAAATGAATGCTCGCAATATTGCCATGGTTTTTGCGCCCAACATGACACAGgt-tagccaacattataagcaaa----------taaagatgtatt----cttctgttgtttattgttggtttctctcaaacagtttaattaggctcattatttagttgaacttcc-------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||| || ||| | ||||| ||||| |   |  ||||    |  |||||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||| |||| |  || |        | | | || | ||  |||| || || |       |    |   || |      ||  |||  |  |      | |||  | |  |                                                                                    
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGCAATATTGCAATGGTTTTTGCTCCAAACATGACTCAAgta-agagtaaatcat--------tttctattgtaaatgtagtatacagttttgctcttagccccaatttttgttattgaattcgtaaaagtcaacctcatcttattgg------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA19G44820.1 (Glycine max), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggt--ggtctctttcttttgaaactagtttagagctaaaa-ctgtgtagc-gtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||||| |||||  | ||||| ||||| || ||||  ||    | |||||| ||||||||||||||  |||| ||||||||||| || |||||||||||||| |||   || |  |  |    |     ||||| ||    | |||| | | |     || |  | | || |  ||   |   || | |  |     || |  ||                                                                                            
CTGGGCAATCAATTTGATGGCAGATGTTGTTGAGCGTGAACAGTTCAACAAAATGAATGCTCGCAATGTTGCCATGGTTTTTGCGCCCAACATGACACAGgt-tagccaacattataagcaaaggtgtattcttctg----ttgtttcgtgttggtttctctcaaacagtttaatcaggctcattatttagttgagcttccttat--------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||||| ||  | |||||||| ||||| || ||   ||||   |  ||||| ||||||||| | || ||||| |||||||||||||| |||||||| ||||||| |  ||| |   |  |||        | || ||| |   | || | |     ||  ||  ||  | | |   || |||  |  |  | | ||   | | |||     |  ||||                                                                           
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtat-gctcacatacacattgga-------tgttaaaattg--tcagtgtt-----tgcttaatgttctattt---gtatttgttggtt-tttatgtgaaattttttttattaaaagga--------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA12G31080.1 (Glycine max), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatct-ttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||||||||||| || ||||| ||||| ||    |  |||  |   || ||||||||||| || |||||||| ||||||||||| || |||||||| ||||| |          |||  |  | | ||  || | ||   | |  |  |   |||   |||| | |      | |  | | || ||||  |||  |  ||   ||| ||                                                                                     
CTGGGCCATCAATCTGATGGCTGATGTTGTCCTACATGAGCATGTTAATAAGATGAATGCGCGTAACATTGCCATGGTTTTTGCACCAAACATGACTCAGgtgtg--------tttccata-ttttttcattctcaagtgactgcaaggaagaaaagatgtaccatacaag-tgctatatattttcattttctactttactaaattgcat------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA03G36630.1 (Glycine max), 5'ss of exon 3
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctct--tcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||||| ||  | |||||| | ||||| || |     ||   ||| ||||| ||| ||||  | ||||||||||||||||||||||| || ||||| |||||||    ||  | |  |   ||  ||| |  |||    |    | ||        ||| ||      |||||  |  || |    | |  || | | || || ||   | |   | |    |      |  |  | || ||   | | || ||  |  | || | | |  | |                     
CTGGGCTATTGATCTCATGTCTGATGTTGTAGCAGAAGAAGATTATAACAAAATGGATGCAAGAAACATTGCTATGGTTTTTGCTCCAAATATGACTCAGgtatgttacatgtatgcttaatgagctcatattttaattatacatgtaacatctttactatg----acgttgttacttgt-taccattagcatgtattcatatgatgataactatgcaaactg------gaaatctagtattt--tttattcacatattttatttttctcttgaaacag----------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||| || ||| | ||||| ||||| |   |  ||||    |  |||||||||||||| || || ||||| ||||||||||| || |||||||| || ||| |||  |  || |        | ||| || | ||  |||| ||  | |       |    |   || |      ||  |||  |  |      | |||  | |  |                                                                                    
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgta-agactaaatcat--------tttttgttgtaaatgtagtatacggttctgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagttta-gagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||| ||||| || ||||| ||||| || ||| ||||       ||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||         | ||   ||       ||| |  | | |  || | | | |   | | ||     ||   ||   |   ||                                                                                                                
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaag-----ttttttgaatgaa-----tctctaaagattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT5G22400.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgt-atagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 ||||||||||| || ||||| ||||| ||  ||   ||   |   |||||||||||| | |||||||| ||||||||||| || || || ||||||||||| |    ||| |     ||| |  | |   | || ||    |  |  || |   |     |          | |  || || |                                                                                                              
TTGGGCCATCAATCTAATGGCAGATGTTGTTCAGTATGAACATCTAAACAAGATGAATTCACGCAACATCGCTATGGTTTTCGCACCAAATATGACACAGgtgagtctgcaacaacaaggttgattatcaatgtttaactcggggtc-agatgggataaaatgattgagaaacacttgtattgtag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgt-atagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
|||| |||||||  | ||| | ||||| ||| |||  ||   | |||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||     | ||  ||||     |||  ||| |||| |   |    || |  |     | | ||  || | || |||  |||  |  | | |       || |                                                                                            
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatgggg-tatctacagt-tggtatccaatgtgctagcctcactagctgactt--------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv06s0080g00580.t01 (Vitis vinifera), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
 |||||||||||||||||||| ||||| ||  ||  ||||  |   ||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |||||   |        ||   |||| |     | |||||| | ||  |       |  ||  |  |  | ||       ||  |    ||||  ||  ||    |||| |                                                                                     
TTGGGCCATCAACCTCATGGCAGATGTCGTCCAGGAGGAGCATCTAAACAAAATGAATGCACGCAACATTGCAATGGTCTTTGCACCAAACATGACTCAGgtgagg--------ttgaatggtttacgcttcttgaaaattgtccaagtagggatttgcatgtccagatgaaat---tgaatgaatatgacgttctcattgcattttaaat----------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ22564 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaact-agtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
||||||  | || |||||||| || || |   ||  |||| | |  |||||||||||  | || ||||| || |||||||||||||| |||||||| ||||||           |||      ||||||| ||||   ||  ||||     |     | ||||  || ||  ||    || | || ||                                                                                                          
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacg---------ttc------ctctttcatttggtgcttggtttttgttttcttttctgtaatgtatttccttt--tgctgtcccag---------------------------------------------------------------------------------------------------------

upper sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ12967 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag
||||||  | || |||||||| || || |   ||  |||| | |  |||||||||||  | || ||||| || |||||||||||||| |||||||| ||||||       |   |||  | |  ||||  ||||     |  |||    ||  || ||| |  | | |||    ||  |                                                                                                                  
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgt--tcctctttcatttggttcttggtttttgttttgtttt----ctgtaa-tgtatttccttttgctgtcccag------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100442337|gb|BY981361.1|BY981361
EST:     AGATGAATGCTCGCAACATTGCTATGGTTCTTGCTCCGAACATGACACAG                         ATGGTTGATCCGCTAACGGCTCTGATGCATGCCGTTCAAGTGATGAACTTG
genomic: AGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagca ... tgccctgcagATGGTTGATCCGCTAACGGCTCTGATGCATGCCGTTCAAGTGATGAACTTG