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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag

Basic information

species Physcomitrella patens
transcript PP1S104_2V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcattta---gctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
||| |||||||| || |  || ||  | ||||||||||| ||||| || || |||||||| || |||||||||||||| ||||| ||||| || || |||||      |  || |||||    |  | | |   |  |   || ||||     ||  | |||| | |     | | |      ||||||  |||    ||||   |                                                            
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcaggcattgtttctcttattgttgttttccttctgaagttttatttttttactggatagtgatgaggaagtttggatttgggtcctggatgt--catatttcag------------------------------------------------------------

upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgtt--cca--gttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
||| |||||||| || |  || ||  | ||||||||||| ||||| || || |||||||| || || ||||||||||| ||||| ||||| || || |||||   |||  ||| ||     |||   |    | |||   | | |||  |||| ||  |  ||| | |     | | |      ||||||  | |    ||||   |                                                            
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttattttttta-ctggatggtgatgaggaagtttggatttgggtcctggatat--catatttcag------------------------------------------------------------

upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
|||||||||||| || |  || ||  | |||||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||||| ||  | ||||||  |     ||    | | | |  |||   ||| |  | |||| ||| | ||  |    | |  | | || || |   | | | |  |                                                                         
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttg---tcttattt-tgttttgcc-tgaagttcacttatccattgaaaagtaatgggaagttgttcctggacatttcag-------------------------------------------------------------------------

upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
|||||||||||| ||||  || ||  |||||||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| ||||||||| | ||||||         || | |||| ||| | | |     | | ||| || |   |   |||    |||   || | | ||   ||  | |  |                                                                         
AAAGAAGGAGACTGGTTATGTTGGACTGAAGAACCAAGGAGCTACCTGTTACATGAATTCCCTTCTTCAGACACTCTACCATATTCCTTACTTCAGAAAGgttgggaaattctcttttttc-ctcctttac--ttgtttcattgatattatttgcaagaaagcactacatttggaactgtgtatt-tcag-------------------------------------------------------------------------

upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ13603 (Selaginella moellendorffii), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
 ||||||||||| |||||||| || |||||||| |||||||| || ||||||||||| || || ||||| ||  | || || || ||||||||||| |||||  |  ||   || | |  |     ||| | | |  | | || | ||   | |||                                                                                                           
GAAGAAGGAGACTGGTTTCGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTACTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaactattatctcttatcccttgactgttcggtctcacagttaagttc-ttgtaattcag------------------------------------------------------------------------------------------------------

upper sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ19227 (Selaginella moellendorffii), 5'ss of exon 5
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattca--tttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag
 ||||||||||| ||||| || || |||||||| |||||||| || ||||||||||| || || ||||| ||  | || || || ||||||||||| |||||  |  ||   || | |  |     ||| | | |  | | || |  | | |  ||  ||                                                                                                         
GAAGAAGGAGACTGGTTTTGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTGCTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaactattatctcttatcccttgactgttcggtctcacagttaagttcttgtgattcag---------------------------------------------------------------------------------------------------------