1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATCATTCGTTACGTCATTGGTCGCAGTTCAAATAGAGGCGACATGCTGGACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaactgacataactgatctcgttttatgtccacttatatctatatggattatcctccgcgttacatttcgcacgtttcactgttcgggatgtacacctaatttcttttcccggtcattagccatattcacatacagattccactgtacgattttcttcgaaggctactgctgatggtgctctgtatctctacag
species | Physcomitrella patens |
transcript | PP1S101_254V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACNNNNNEST: gi|208374807|gb|DC936430.1|DC936430
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACTTTTT
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTTGAANGTGATGATGACGTTACNCAGAAAACCAGACTTTEST: gi|100412621|gb|BY974825.1|BY974825
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTT-GAAAGTGATGATGACGTTACACAGAAAACCAGACTTT
EST: CCCGACAA-TTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACNNNNNEST: gi|100386356|gb|BY988023.1|BY988023
genomic: CC-GACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACTTTTT
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACEST: gi|100435307|gb|BY979177.1|BY979177
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGAC
EST: ACCGACAAATTGATCAAGAAAGCAAAGGAACAAATGANNNNNNNATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACEST: gi|100424461|gb|BY958499.1|BY958499
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGAC
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAANACCAGACNNNNNEST: gi|100447407|gb|CJ971706.1|CJ971706
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACTTTTT
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACNNNNNEST: gi|100447901|gb|CJ972200.1|CJ972200
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACTTTTT
EST: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTG GAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACNNNNN
genomic: ACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaact ... atctctacagGAAGATCATGTTGAAAGTGATGATGACGTTACACAGAAAACCAGACTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATTCGTTACGTCATTGGTCGCAGTTCAAATAGAGGCGACATGCTGGACCGACAAATTGATCAAGAAAGCAAAGAAACAAATGATTTTTTAATATTGgtactcaactgacataactgatctcgttttatgtccacttatatctatatggattatcctccgcgttacatttcgcacgtttcactgttcgggatgtacacctaatttcttttcccggtcattagccatattcacatacagattccactgtacgattttcttcgaaggctactgctgatggtgctctgtatctctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA