1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTAACAAAGGAGCATATACAGgtaggattctcagccccgtagtatatgtttagtagcagcatacgtttgggtattgaaaatgacacaccatagatgtttgaccaccgatttcagtcatttattcttgattatgattatggttcttgcag
species | Physcomitrella patens |
transcript | PP1S101_227V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAGCTAACAAAGGAGCATATACAG ACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAEST: gi|208399841|gb|DC904713.1|DC904713
genomic: TAAGCTAACAAAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAA
EST: TAN-CTANCAA-GGAGCATATACAG AC-ATGAGTAAEST: gi|67696830|gb|BJ957063.1|BJ957063
genomic: TAAGCTAACAAAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAA
EST: TAAGCTAACAAAGGAGCATATACAG ACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTGEST: gi|208357815|gb|DC918605.1|DC918605
genomic: TAAGCTAACAAAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTG
EST: TAAGCTAACAAAGGAGCATATACAG ACCATGAGTAAACTTGTAGGGAAAGCTGGTAAAACCGCGAAGCTTAGTGTGEST: gi|208360244|gb|DC950217.1|DC950217
genomic: TAAGCTAACAAAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTG
EST: TAAGCTAACAAAGGAGCATATACAG ACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTGEST: gi|67727706|gb|BJ977965.1|BJ977965
genomic: TAAGCTAACAAAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTG
EST: AAGGAGCATATACAG ACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTG
genomic: AAGGAGCATATACAGgtaggattct ... gttcttgcagACCATGAGTAAACTTGTAGGGAAAGCTGGTGAAACCGCGAAGCTTAGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAACAAAGGAGCATATACAGgtaggattctcagccccgtagtatatgtttagtagcagcatacgtttgggtattgaaaatgacacaccatagatgtttgaccaccgatttcagtcatttattcttgattatgattatggttcttgcag
- - - AAGGAG
- - - - GGAGCA