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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttatcgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata...

Basic information

species Physcomitrella patens
transcript PP1S101_210V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ20167 (Selaginella moellendorffii), 5'ss of exon 5
TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttatcgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata
||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||| ||||||| |||||||||||||||| || ||| | || ||| ||||||| || | | | ||| || || | | |||| || ||
TGGGACTTGACCGCTGGAAAGCTTATACATGATTTTAAATATCATGAGGCTCAAATTCAATGCTTAGACTTTCATCCACACGAATTCTTACTTGCCTCAGgtatgttcaa-acgct--taacatag-----ttgtctaatg--acctcgggacgcag-------------------------------------------

upper sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ23110 (Selaginella moellendorffii), 5'ss of exon 5
TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttatcgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata
||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||| ||||||| |||||||||||||||| || ||| | || ||| ||||||| || | | ||| || || | | | |||| || ||
TGGGACTTGACCGCTGGAAAGCTTATACATGATTTTAAATATCATGAGGCTCAAATTCAATGCTTAGACTTTCATCCACACGAATTCTTACTTGCCTCAGgtatgttca---aactcttaacatag-----ttgtccaatg--acctcgggacgcag-------------------------------------------

upper sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ26184 (Selaginella moellendorffii), 5'ss of exon 5
TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttat-cgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata
||||| ||||||||||| |||||||| || |||||||| |||||||| | || ||| |||||||||| ||||| ||||| |||||||| || |||||| | | | |||| | | | | || | || | |
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacttgcattttcag----------------------------------------------------

upper sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 6
TGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttat-cgtgttgctaagtcagacaccccgttcgacgttacctgggtctgccttgaagactacgcgtgaaatgtggacgtaggtgcatgtgtaata
||||| ||||||||||| |||||||| || |||||||| |||||||| | || ||| |||||||||| ||||| ||||| |||||||| || |||||| | | | |||| | | | | || | | || | |
TGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGACAGgtttggctttacgtgatatttatactcctcttccaacctgcattttcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162255969|gb|FC431733.1|FC431733
EST:     CCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAG                         GTTCTGCGGACAGGACAGTCAAGTTTTTTGACCTCGAAACATTTGAGTTGA
genomic: CCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCACAGgtatttttat ... catgatgtagGTTCTGCGGACAGGACAGTCAAGTTTTTTGACCTCGAAACATTTGAGTTGA