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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTCTGGAAATCAACCTCGACGGTGTGAAGACCTCGGTCTTATTCTTGGACACGGAAGGCTTTGAGAGTATTGGAAAGTCCAATGTTTATGATGATAGgtacatatctccgtggtgaactttatgcaacacattgtaccttttgcgaaaacgtaatagtcgaagtaccgcaatacgcatacgcctttacttaattatgctgtgtcgcattagtaagagctggttgtgaagttctgtttcatgactcgagtgtgaactttggtatgcag

Basic information

species Physcomitrella patens
transcript PP1S100_89V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S100_89V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
AGCCTCTGGAAATCAACCTCGACGGTGTGAAGACCTCGGTCTTATTCTTGGACACGGAAGGCTTTGAGAGTATTGGAAAGTCCAATGTTTATGATGATAGgtacatatctccgtggtgaactttatgcaacacattgtaccttttgcgaaaac-gtaatagtcgaagtaccgcaatacgcatacgcctttacttaattatgctgtgtcgcattagtaagagctggttgtgaagttctgtttcatgactcgagtgtgaactttggtatgcag
  ||| | |||||  || | || |||   ||    || ||| | | | | || || ||||| ||||||||| |||| ||||| ||||| |||||||||||||   | |  | |   || |    |||  |   | | | || ||| |     |  | ||||      |||     |     ||    |||| | | || |  |||| |                                                               
CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtg-cagaaatgga----atgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag-------------------------------------------------------------

upper sequence: PP1S100_89V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G030138_T01 (Zea mays), 5'ss of exon 5
AGCCTCTGGAAATCAACCTCGACGGTGTGAAGACCTCGGTCTTATTCTTGGACACGGAAGGCTTTGAGAGTATTGGAAAGTCCAATGTTTATGATGATAGgtacatatctccgtggtgaactttatgcaacacattgtaccttttgcgaaaacgtaatagtcgaagtaccgcaatacgcatacgcctttacttaattatgctgtgtcgcattagtaagagctggttgtgaagttctgtttcatgactcgagtgtgaactttggtatgcag
  ||  | ||  |  |  |||  ||    |||   || ||  ||| | ||||||| ||||| ||||||||| ||||||| || ||||| |||||||||||||   |       ||  ||  | || |   |||||  | |  |     | | | |  | ||         || |    ||||     ||   |  || ||                                                                      
CCCCCGTTGAGGTGGATATCGGTGGCTCCAAGGTGTCTGTTCTATACCTGGACACCGAAGGATTTGAGAGTGTTGGAAAATCAAATGTATATGATGATAGgtttgt-------tgccgacatataagatgcacataattc--tgaattatagccttttggtttggacgtggctacggacatattggattttctgcttgtgacag------------------------------------------------------------------