Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAAGGGGTCCATCCCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACGgtcggtagccatactcttgtcacgatttcgtaccttctgatgctattctatgtaaatggttgctgtatggtagctgtatgttcaacgtattccgatttct...

Basic information

species Physcomitrella patens
transcript PP1S9_243V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ18116 (Selaginella moellendorffii), 5'ss of exon 4
TCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAAGGGGTCCATCCCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACGgtcggt----agccatactcttgtcacgatttcgtaccttctgatgctattctatgtaaatggttgctgtatggtagctgtatgttcaacgtattccgatttct
 || || | || ||| || ||    |     || |  ||    || ||||||||||||||||| || | | | ||||||||||| ||||| |||||||| ||  ||    || |   ||   ||  || ||    |   |  |||  || ||  || |    |                                         
CCGCGCAGCTGTGATCCTCGGGGAGCAACCCGGTAAAAAGTTTGTGCATCCCAACGACCACGTAAACAGGGGCCAGTCTTCAAACGACACTTTTCCTACTgtaagtttgaagtctgtcttacgtttcgcttcaagaaaatgagattttaatcc-tgcactcag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192987|gb|FC369903.1|FC369903
EST:     CCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACG                         GCGATGCATATTGCAGCTGCTAGAGAGGCCAGCAGTAGGCTGATTCCTCAT
genomic: CCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACGgtcggtagcc ... ccgtaactagGCGATGCATATTGCAGCTGCTAGAGAGGCCAGCAGTAGGCTGATTCCTCAT
EST: gi|162189500|gb|FC365514.1|FC365514
EST:     CCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACG                         GCGATGCATATTGCAGCTGCTAGAGAGGCCAGCAGTAGGCTGATTCCTCAT
genomic: CCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACACCTTTCCTACGgtcggtagcc ... ccgtaactagGCGATGCATATTGCAGCTGCTAGAGAGGCCAGCAGTAGGCTGATTCCTCAT