1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGAATCGAAAGCCAACAACAAGTCTATGCGATTCGTTCAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctcacaagatctatttcactctaaatcacatgtcatatactgaagctgaacttatcaaagatgcaaaattcaattttcactttcttattcggctatacccagtgatgtaagttttatcggatttattgtttgctattatttgtcaggcttatgaatgatgtatagctgtattgcag
species | Physcomitrella patens |
transcript | PP1S9_238V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTG GGTTGTAGGCGCTGCAGCAATTCGCAAGTATGTGAATGGCGTGGCCGGTGTEST: gi|67570009|gb|BJ942833.1|BJ942833
genomic: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctca ... tgtattgcagGGTTGTAGGCGCTGCAGCAATTCGCAAGTATGTGAATGGCGTGGCCGGTGT
EST: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTG CEST: gi|67570009|gb|BJ942833.1|BJ942833
genomic: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctca ... tgtattgcag-
EST: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTG CEST: gi|67570009|gb|BJ942833.1|BJ942833
genomic: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctca ... tgtattgcag-
EST: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTG CEST: gi|162184385|gb|FC359131.1|FC359131
genomic: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctca ... tgtattgcag-
EST: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTG GGTTGTAGGCGCTGCAGCAATTCGCAAGTATGTGAATGGCGTGGCCGGTGT
genomic: CAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctca ... tgtattgcagGGTTGTAGGCGCTGCAGCAATTCGCAAGTATGTGAATGGCGTGGCCGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATCGAAAGCCAACAACAAGTCTATGCGATTCGTTCAAGAACTTATTTCGACAGTATTGTTTATGATAATCTTCAGTGTCATGTGgtaatgctcacaagatctatttcactctaaatcacatgtcatatactgaagctgaacttatcaaagatgcaaaattcaattttcactttcttattcggctatacccagtgatgtaagttttatcggatttattgtttgctattatttgtcaggcttatgaatgatgtatagctgtattgcag
- - - - - - - - - - - - - - - - - - - - AAGAAC