1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATTTCATCGCTGCTTCATTCGTGAGAAAAGGGGAGGACGTCAAGAAGATCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattttttgatttcgccgacctcgaacattcaagggttgtttttatttgcaactttttaatgttggagctgattttgtgagatctggagtcgtttgaaag
species | Physcomitrella patens |
transcript | PP1S90_85V6.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAG GTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACCEST: gi|162167224|gb|FC342789.1|FC342789
genomic: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattt ... cgtttgaaagGTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACC
EST: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAG GTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACCEST: gi|162218606|gb|FC394572.1|FC394572
genomic: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattt ... cgtttgaaagGTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACC
EST: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAG GTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACCEST: gi|162192446|gb|FC368608.1|FC368608
genomic: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattt ... cgtttgaaagGTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACC
EST: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAG GTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACC
genomic: TCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattt ... cgtttgaaagGTGGAGAATCAAGAAGGATTGGTGAACTTCGACGATATCCTTAGAGAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTCATCGCTGCTTCATTCGTGAGAAAAGGGGAGGACGTCAAGAAGATCAGAGCGCTTCTTGGAAGCCACGCAAAAACGATCCAGATCATCTCCAAGgtacacattttttgatttcgccgacctcgaacattcaagggttgtttttatttgcaactttttaatgttggagctgattttgtgagatctggagtcgtttgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA