1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCGTGCCGAAGCGACAGATGTGGCAAACGCTGTGCTGGATGGGACAGATGCTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctttgtttagccaggcctatagtcgagctggcgtgcacgattgttacctttgattctaaagcttttaatgaggacacacttcagaggctgacaaggcttgatcggaatacctcgtgcag
species | Physcomitrella patens |
transcript | PP1S90_133V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162231958|gb|FC409032.1|FC409032
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162276390|gb|FC452445.1|FC452445
genomic: CAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|208373198|gb|DC945152.1|DC945152
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162276389|gb|FC452444.1|FC452444
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162178322|gb|FC354728.1|FC354728
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162201557|gb|FC377439.1|FC377439
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|67700956|gb|BJ961189.1|BJ961189
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162238393|gb|FC417352.1|FC417352
genomic: CCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162238394|gb|FC417353.1|FC417353
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|162188470|gb|FC365068.1|FC365068
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTATEST: gi|67570295|gb|BJ943119.1|BJ943119
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
EST: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCA GTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
genomic: CTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctt ... cctcgtgcagGTGGCAGTGATGTCCCAGATCTGCCAGGAGGCTGAGGCTTCTTTGGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTGCCGAAGCGACAGATGTGGCAAACGCTGTGCTGGATGGGACAGATGCTGTGATGCTGAGTGGAGAGACAGCAAATGGCTTGTACCCTGAGCTAGCAgtaagttctttgtttagccaggcctatagtcgagctggcgtgcacgattgttacctttgattctaaagcttttaatgaggacacacttcagaggctgacaaggcttgatcggaatacctcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA