Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcactcccagtggttgtcggatttcggttgtattaatttctctactc...

Basic information

species Physcomitrella patens
transcript PP1S8_67V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 3
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgta---agatatctcgccttcataattgttcttctaaggttt-ctaagaat-cagga----gtcactcccagtggttgtcggatttcggttgtattaatttctctactc
 |||||||| ||||| || || || ||||| |||||||||||||| || |||||||||||||| ||||| |||||||| ||  | |||||||| |||||||||   || | | | || ||  | | |    || || ||  |  | ||||  |||||    |  |  | ||| | | |    |     |   ||| ||           
GTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGACATTTTCCTGAGGGAGCTCATCTCCAATGCTTCTGATgtatgtagttgtattgcattt-tgactccctttttagggcctattcagaacacaggaaaaggaaaaacacag-gataggaaaaacgtaggaatatgaaagga-------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 3
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcactcccagtggt-tgtcggatttcggttgtattaatttctctactc
 |||||||| ||||| || || || ||||| |||||||||||||| || ||||||||||||||||| || |||||||| ||  | |||||||||||||||||| |   |    |   |     ||||  |      ||    |   ||   | | |||    ||||| |   | || || || |                 
GTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattgcttctgacccctgtgtttattctgcattgtggatggtcgaaattaact----gtggtgttctgcatgtctgtag-----------------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G110574_T01 (Zea mays), 5'ss of exon 7
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaag-atatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcactcccagtggttgtcggatttcggttgtattaatttctctactc
 ||||| || |||||||| || || ||||| |||||||||||||| || |||| ||||||||||||||| |||||||| ||  | || ||||||||||||||| | ||  |   |   |   | ||||  |   |  ||    |   ||   | | |||   ||  ||| | | || || || |                 
GTTCCAAGCTGAGGTTTCCAGACTCATGGACATCATCATCAACTCACTCTACAACAACAAGGATATTTTCCTGAGGGAGCTCATATCTAATGCCTCTGATgtatgtattacatactgaccctagtgtttgttctacattgtggatgctcgaaattaact---aggtgttct-gcatgtctgtag-----------------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G141931_T01 (Zea mays), 5'ss of exon 3
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaag----atatctcgccttcataattgttcttc--taaggtttctaagaatcagg-agtcactcccagtggttgtcggatttcggttgtattaatttctctactc
 ||||| || |||||||| || || ||||| |||||||||||||| || ||||||||||||||||| || |||||||| ||  | || ||||||||||||||| |    | ||||  ||    |  ||||||| |  |  || | ||   ||| |    |    ||    ||  ||| |                            
GTTCCAAGCTGAGGTTTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCTAATGCCTCTGATgtatgtattacatctgacccctgtgtttgttctgcattgtggatgctcgaaattaactgggtgttctgcatgtctgtag----------------------------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G022909_T01 (Zea mays), 5'ss of exon 4
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaag----atat-ctcgccttcataattgttcttc--taaggtttctaagaatcagg-agtcactcccagtggttgtcggatttcggttgtattaatttctctactc
 ||||| || |||||||| || || ||||| |||||||||||||| || ||||||||||||||||| || |||||||| ||  | || ||||||||||||||| |    | || ||  ||    |  ||||||| |  |  || | ||   ||| |    |    ||    ||  ||| |                            
GTTCCAAGCTGAGGTTTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCTAATGCCTCTGATgtatgtactacatactgacccctgtgtttgttctgcattgtggatgctcgaaattaactgggtgttctacatgtctgtag----------------------------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G063988_T02 (Zea mays), 5'ss of exon 10
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaag----atat-ctcgccttcataattgttcttc--taaggtttctaagaatcagg-agtcactcccagtggttgtcggatttcggttgtattaatttctctactc
 ||||| || |||||||| || || ||||| |||||||||||||| || |||| |||||||||||| || | |||||| ||  | || ||||||||||||||| |    | || ||  ||    |  ||||||| |  |  || | ||   ||| |    |    ||    ||  ||| |                            
GTTCCAAGCTGAGGTTTCCAGACTCATGGACATCATCATCAACTCACTCTACAACAACAAGGATATCTTCCCGAGGGAGCTCATATCTAATGCCTCTGATgtatgtattacatactgacccctgtgtttgttctacattgtggatgctcgaaattaactgggtgttctgcatgtctgtag----------------------------

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 3
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataa-----ttgttcttctaaggtttctaagaatcaggagtcactcccagtggttgtcggattt--cggttgt-attaatttctctactc---
 ||||| || || || ||  |||| ||||||||||||||||| || || ||||| ||||||||||| || || || ||  || | |||||||| |||||||||||   | |    || | ||     || || ||  ||  |   |     | |    |   |   | | ||||   |||||     | |  | |||| |    | ||   
GTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCTCTCTACAGTAACAAGGATATCTTCCTCAGAGAGTTGATTTCCAATGCTTCTGATgtaagcgctttttttttaaaaaaaatatttttgtttaaaaatccttgcatttaaattttttatttgaattgttgaacgatttgttaatggcgaataatgtgcacattctag

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 3
-ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcactcccagtggttgtcgg-atttcggt------tgtattaatttctctactc-------------------------------------------------
  ||||| || || || ||| |||| |||||||| |||||||| || || ||||| ||||||||||| || || || ||  || | |||||||| |||||||||||   | |    || ||  || ||  | | || |     | || |   |   | ||  | || ||||    |||| |        || ||| |  | |  |  |                                                 
AGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTCTCTCTACAGTAACAAGGATATCTTCCTCAGAGAGTTGATTTCCAATGCTTCTGAtgtaag-cgttttttttttattgttatttatttgagtt-----aaaacctacatctattcata-tgcttgtttacattttgaaaatccatgcatttaaattttcatccaaactccaacgatgtgttattgttaatgacaaatgatgcttgcattcta

upper sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcact-cccagtggttgtcggatttcggttgtattaatttctctactc
 || ||||| ||||| ||  |||| ||||||||||| |||||||| || || |||||||| || |||||  | |||||  || | |||||||| |||||||||||           |  |  |||||  |   |  |||||     || | |||   | |  | ||||      |||  | |||  || |           
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaag------tattattttgtttgtttctaggaactttctt----tctgaagttgttacttaatggt-----aattctgcttgatttcag----------