Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTCAGCCAGAATCAATTGTGCCTGTGGAAGTATCCATCGATGGTCAAGATGGCTGAATTCACAGGGCACACATCCAGGGTGTTACACCTAGCACAGgttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcag

Basic information

species Physcomitrella patens
transcript PP1S8_56V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_56V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
TGGGTTCAGCCAGAATCAATTGTGCCTGTGGAAGTATCCATCGATGGTCAAGATGGCTGAATTCACAGGGCACACATCCAGGGTGTTACACCTAGCACAGgttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcag
||| ||||  ||||| ||| |   | |||||||||| ||||||||||| |||||||||||| | |  || || || ||  | ||  |   | | || ||||| |  ||||   |  |||| |  | |   || |||  || || |||    |  ||| | |||    | ||  | |  | | |  |  || | | |    | |     |   || ||||
TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtga--aattcttc--agacta-gttaacagttgcttatc-tgcatt----gagtgcatgcatgctatgcta-gtgt-gagaacattgcttatatagttcttgctggttaaact-gcag