1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAACAACGTCGACAAAAAGAGTGTGCTGGAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttctgctgccttcaatcctgtgaatgattttatagaatgatattgcgtatctatgtgagttctgaaaggaaacggaattgaagatgtacttgt...
species | Physcomitrella patens |
transcript | PP1S8_105V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|162221832|gb|FC398399.1|FC398399
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|22491811|gb|BU051734.1|BU051734
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|18339333|gb|BJ171360.1|BJ171360
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|162222858|gb|FC399320.1|FC399320
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|208348631|gb|DC905868.1|DC905868
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|162221833|gb|FC398400.1|FC398400
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|22492703|gb|BU052626.1|BU052626
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|37840617|gb|BJ598625.1|BJ598625
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|37834059|gb|BJ592071.1|BJ592071
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|67579152|gb|BJ951303.1|BJ951303
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|162222859|gb|FC399321.1|FC399321
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|7286949|gb|AW599436.1|AW599436
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGEST: gi|67507871|gb|BJ940747.1|BJ940747
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|37835955|gb|BJ593967.1|BJ593967
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCGEST: gi|22132772|gb|BQ827346.1|BQ827346
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
EST: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGG CATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
genomic: GAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttc ... catattgcagCATCATTCTAGAGACTGATGCCAACGTCATAGCCGGCAGAGTTTCAATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAACGTCGACAAAAAGAGTGTGCTGGAAAACCTAGATCTCGTCCTTCTCTGCCTTGATGAGATCATAGATGGCGGgtatatcttctgctgccttcaatcctgtgaatgattttatagaatgatattgcgtatctatgtgagttctgaaaggaaacggaattgaagatgtacttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa