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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaatgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgctgcttgcggtcagctgattgcttcct...

Basic information

species Physcomitrella patens
transcript PP1S87_129V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 5'ss of exon 4
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaatgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgctgcttgcggtcagctgattgcttcct
| ||||| ||||| ||| |  | || |||||| ||||||| ||||||| | ||    || | || ||||| || || ||||||||||||||||| ||||||||||||   ||     || ||  |   |  |  ||       | |  |||||||    || ||  ||   ||||        ||||             
TAATGCGCAAGGATACACTTACAGATGATGAATCTAGATTTTATGTTGCGGAGACAATTCTAGCAATTGAATCCATACACAAGCACAATTATATTCATAGgtaattc---attgataataaaaattgcatggcattc------ggtagcaaatttgccactccatctt---tgctatacattttcag-------------

upper sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 4
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaatgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgct-gcttgcggtcagctgattgcttcct----
| ||| | ||||| || ||| ||||||||||||| ||||| ||||| ||  |     ||||||||||||| || || || |||||||||||||||||||||||  | || ||  |   | | |  ||  | | |     ||   || ||     ||   |  ||  | |  |  |   ||  ||| ||||  |   ||       
TTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgta--tgcatatacctgttcatttactttcagagca---gtcaaatttccttagttgtaccacatttaacttttttatttagggttagcttctaatttatcctgt

upper sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 5
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgtaattccaaa--tgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgctgcttgcggtcagctgattgcttcct----
| ||| | ||||| |  ||| ||||||||||||| ||||| ||||| ||  |    ||||| |||||||| || || || |||||||||||||||||||||||     | |  ||| |  ||| | || || |     ||| |     || |  | |    |       |   | ||  ||  ||| ||||  |   ||       
TTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacttgttcatttactttcggagtagtcctattt----ccttagttgtaccacatttaactt--ttctatttagggttagcttctaatttgtcctgg

upper sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ29515 (Selaginella moellendorffii), 5'ss of exon 4
TCATGCGGAAGGACACATTGTCTGAAGATGAAGCTAGATTCTATGTTGGGCAGTGTGTTTTGGCTATTGAGTCAATCCACAAGCACAATTATATACATAGgta-attccaaatgtcctattaatctctgactgtgtttatgtgggatctcaaatttttagctgcaggttaaatgctgcttgcggtcagctgattgcttcct
| ||||||||||||||| |  | |||||||||||||||||||| || ||||||    ||||||| || ||||| || |||| |||||| || || || |||||  || | | |   | |   | |   |  ||   |||    |  | ||    | ||   |||||                                   
TTATGCGGAAGGACACACTAACAGAAGATGAAGCTAGATTCTACGTCGGGCAGGCCATTTTGGCAATCGAGTCCATTCACAGGCACAACTACATTCACAGgtatgttgcgagt---cga--gaacatggcttgaacttac-cagtttttctgtgtcttctgtgcag-----------------------------------