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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCGTAAGGATACACTTACAGAAGACGAAGCCAGATTTTATGTTGGACAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttgggatgtcgtaatccctgcttatagtcatgaggggcttaactccataggttgtgaatagcatgctagattttatcaacagttttctttccaga...

Basic information

species Physcomitrella patens
transcript PP1S86_100V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S86_100V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 5'ss of exon 4
TTATGCGTAAGGATACACTTACAGAAGACGAAGCCAGATTTTATGTTGGACAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttgggatgtcgtaatccctgcttatagtcatgaggggcttaactccataggttgtgaatagcatgctagattttatcaacagttttctttccaga
| ||||| ||||||||||||||||| || ||| | |||||||||||||   |     || | || || || || || |||||||| || || || |||||||| ||       |  |||    ||| |   | |||  ||     || |    |     |        ||||| |  || |||                 
TAATGCGCAAGGATACACTTACAGATGATGAATCTAGATTTTATGTTGCGGAGACAATTCTAGCAATTGAATCCATACACAAGCACAATTATATTCATAGgtaattcattg-ataataaaaattgcat---ggcattcggtagcaaatttgccactccatc-----tttgctatacattttcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162175283|gb|FC351481.1|FC351481
EST:     CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAG                         AGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
genomic: CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttggg ... tttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
EST: gi|162152200|gb|FC328179.1|FC328179
EST:     CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAG                         AGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
genomic: CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttggg ... tttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT