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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGCCTGCACTCCAGAAGAAGTACAACAGCATTTTCAGTCGTGTGGTACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattccttgttcaccagcttggtcactgagcatttgctgtgatgctttgataatatcttactagaggctttgaacttggatagcatatgtagaata...

Basic information

species Physcomitrella patens
transcript PP1S85_168V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S85_168V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ10007 (Selaginella moellendorffii), 5'ss of exon 3
ATTATGCCTGCACTCCAGAAGAAGTACAACAGCATTTTCAGTCGTGTGGTACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattccttgttcaccagcttggtcactgagcatttgctgtgatgctt-tgataatatct-tactagaggctttgaacttggatagcatatgtagaata
||||| | ||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| || || || ||||| ||||||||||| |||   ||||| ||||||   || | |  ||  | |   ||  |   |     | | | |||||  ||||  | ||| | ||    |                             
ATTATTCGTGCACACCAGAGGAAGTCCAACAGCACTTTCAATCCTGTGGCACTGTTAACCGGGTTACTATTTTAACTGACAAGTTCGGACAGCCCAAGGGgtaa--atcttcg--caaaaac---gtttccctgtgccggttctaatgctgatgatcgtttctctgcttacag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578985|gb|BJ951136.1|BJ951136
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
EST: gi|67507705|gb|BJ940585.1|BJ940585
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
EST: gi|67578551|gb|BJ950718.1|BJ950718
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT