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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacgaggtttatccttgggcagctgcggcgttcttttaacatcttggtttgcttttaatgttttaatttaatttaatttaagtttttttttttttttttttttttttttgggtttggaggtgtatagtggatgaaatcatttacttatatcgcaatgtcgtgtaatcgcag

Basic information

species Physcomitrella patens
transcript PP1S81_162V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164532|gb|FC341827.1|FC341827
EST:     CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAA                         AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
genomic: CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacg ... gtaatcgcagAGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
EST: gi|162174148|gb|FC350351.1|FC350351
EST:     CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAA                         AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
genomic: CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacg ... gtaatcgcagAGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
EST: gi|100418283|gb|BY993423.1|BY993423
EST:     CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAA                         AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
genomic: CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacg ... gtaatcgcagAGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
EST: gi|18349687|gb|BJ181737.1|BJ181737
EST:     CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAA                         AGATGCTGGTGCAGAACAAAAATTTA
genomic: CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacg ... gtaatcgcagAGATGCTGGTGCAGAACAAAAATTTA
EST: gi|208378657|gb|DC903688.1|DC903688
EST:     CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAA                         AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG
genomic: CTTATCGTAAACTTGCACGACAATATCATCCTGATGTTAACAAgtaagtgacg ... gtaatcgcagAGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG