1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGAAGGCAACGCAGGGGATCTACCCGCTGCAGAACACGTTCATCAGGAAGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgttttactcgtttgttcaattttgtagtacagatgaattgttacgggattttgtatttcttctttgttgtttttgttttttttgttttttgttcgctttttaggcttacgaatttagcagtttttgtgtttgttttacaagatgttttgccgtatgtag
species | Physcomitrella patens |
transcript | PP1S80_113V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAA GTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTTEST: gi|37824860|gb|BJ582926.1|BJ582926
genomic: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgtttta ... ccgtatgtagGTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTT
EST: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAA GTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTTEST: gi|67726288|gb|BJ976547.1|BJ976547
genomic: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgtttta ... ccgtatgtagGTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTT
EST: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAA GTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTTEST: gi|15729153|gb|BI741168.1|BI741168
genomic: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgtttta ... ccgtatgtagGTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTT
EST: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAA GTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGATGCCAGTT
genomic: AGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgtttta ... ccgtatgtagGTTCATGGAGACTACAGCGAAGAGGTCGGTGCAAAGATTGAGAGGCCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAAGGCAACGCAGGGGATCTACCCGCTGCAGAACACGTTCATCAGGAAGGTGAAGATATTGAAGGCTCCGAAGTTCGACCTCATGAAGTTGATGGAAgtacgttttactcgtttgttcaattttgtagtacagatgaattgttacgggattttgtatttcttctttgttgtttttgttttttttgttttttgttcgctttttaggcttacgaatttagcagtttttgtgtttgttttacaagatgttttgccgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA