Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATTGGCCGAAGTTTTTGGTGCATAAAAATAAGCAGCGGCTTACTAAAATGACTCAGTACTTGATCCGAATGCGGAAACTAGCATTGAAAACCAAgtaagcgtttcaccggaagtgggctgtttaccaattcacataaagagactgacaattatcagagaaccgtattgttttcggaatcttgcgccttgcctcctctactggaaagcggttgtttgtcttctaatttgtccaagtattcctgtgcgtaacgttctctaacttacataccattgacctgcag

Basic information

species Physcomitrella patens
transcript PP1S7_209V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_209V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ07625 (Selaginella moellendorffii), 5'ss of exon 3
GAACATTGGCCGAAGTTTTTGGTGCATAAAAATAAGCAGCGGCTTACTAAAATGACTCAGTACTTGATCCGAATGCGGAAACTAGCATTGAAAACCAAgtaagcgtttcaccggaagtgggctgtttaccaattcacataaagagactgacaattatcagagaaccgtattgttttcggaatcttgcgccttgcctcctctactggaaagcggttgtttgtcttctaatttgtccaagtattcctgtgcgtaacgttctctaacttacataccattgacctgcag
 |||||||||||||||||||||| || ||||| |||||||| || || |||||||| ||||| |||||||||||||| |  || || ||||||| |||||  |  |              | ||||| |  | || | |        |    ||| |  | |  |  | |   |   |                                                                                                           
CAACATTGGCCGAAGTTTTTGGTACACAAAAACAAGCAGCGTCTCACAAAAATGACACAGTATTTGATCCGAATGCGCAGGCTCGCCTTGAAAAACAAgttcgtat-------------agttgtttcctcaatctcttctc----ttacggatttttcgtgcgctctttcactgcag-----------------------------------------------------------------------------------------------------------

upper sequence: PP1S7_209V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ11026 (Selaginella moellendorffii), 5'ss of exon 3
GAACATTGGCCGAAGTTTTTGGTGCATAAAAATAAGCAGCGGCTTACTAAAATGACTCAGTACTTGATCCGAATGCGGAAACTAGCATTGAAAACCAAgtaagcgtttcaccggaagtgggctgtttaccaattcacataaagagactgacaattatcagagaaccgtattgttttcggaatcttgcgccttgcctcctctactggaaagcggttgtttgtcttctaatttgtccaagtattcctgtgcgtaacgttctctaacttacataccattgacctgcag
 |||||||||||||||||||||| || ||||| |||||||| || || |||||||| ||||| |||||||||||||| |  || || ||||||| |||||  |  |       |       || ||  |  |   |  |   | | |   |  | |    ||                                                                                                                           
CAACATTGGCCGAAGTTTTTGGTACACAAAAACAAGCAGCGTCTCACAAAAATGACACAGTATTTGATCCGAATGCGCAGGCTCGCCTTGAAAAACAAgttcgtatagttgttgcctcaatctcttctcttacggatttttcgtg-cgctccttcactgcag---------------------------------------------------------------------------------------------------------------------------