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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAATTTGTGGTAAAACTAATCGAAGGTTTGCGAGAACTTTCTGCTACCGTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAGgtaaaaggtcattttccaagatgagcaggaacttcaatcctttcagatcacatagcagccatttcagggtgtgcactgctcgagctagcaatccatattgcgtgcaagactaatcgttgcttgtctcccatgtag

Basic information

species Physcomitrella patens
transcript PP1S78_70V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100418032|gb|BY993303.1|BY993303
EST:     GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAG                         GATTTCGCTCGAGAAAGCCATACCAGCAGGATACGATGACTCGACTTGGCC
genomic: GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAGgtaaaaggtc ... tcccatgtagGATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
EST: gi|67571633|gb|BJ944457.1|BJ944457
EST:     GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAG                         GATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
genomic: GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAGgtaaaaggtc ... tcccatgtagGATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
EST: gi|162235840|gb|FC412391.1|FC412391
EST:     GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAG                         GATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
genomic: GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAGgtaaaaggtc ... tcccatgtagGATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
EST: gi|67577778|gb|BJ949945.1|BJ949945
EST:     GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAG                         GATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC
genomic: GTCTGGAATAGCAATACACTTTCCACCGACGATTTCATTGGCAGTACAAGgtaaaaggtc ... tcccatgtagGATTTCGCTCGAGAAAGCCATATCAGCAGGATACGATGACTCGACTTGGCC