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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGAGATACAGCACTCGAATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactgttttcaagagtctctgcctctctcgttttgatttgtgtaatcacgaaatattcacatgattcagtatatgaatggtttgtttatttaaga...

Basic information

species Physcomitrella patens
transcript PP1S78_33V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338507|gb|BJ170531.1|BJ170531
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|6167188|gb|AW145452.1|AW145452
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGGGGCGGTTGAATTGAACTTGTNTGAGTTCCCAATGGAAAGAAAT
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGT-TGAGTTCCCAATGGAAAGAAAT
EST: gi|162240059|gb|FC418823.1|FC418823
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|162240058|gb|FC418822.1|FC418822
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|37821556|gb|BJ579622.1|BJ579622
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|208381716|gb|DC928379.1|DC928379
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|18334929|gb|BJ166947.1|BJ166947
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|162256323|gb|FC432333.1|FC432333
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|15728433|gb|BI740785.1|BI740785
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: gi|7287371|gb|AW599858.1|AW599858
EST:     AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG                         CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAAGAGATACAGCACTCGAATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactgttttcaagagtctctgcctctctcgttttgatttgtgtaatcacgaaatattcacatgattcagtatatgaatggtttgtttatttaaga

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