1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTGATACATCTGGGAGGCCACTTCGCAGGAGGTCAAATCCTTCATTGGGCCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctgcacttgacactagtttgcagatatgatcttgattaatggcaccgatagagaactaagagcatggcgaggggaatcgatctccaaggagcgtgaagaccaggtttcatgtattgctgcattcattgtgtgcag
species | Physcomitrella patens |
transcript | PP1S77_122V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|162223261|gb|FC400230.1|FC400230
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|37839440|gb|BJ597448.1|BJ597448
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|162215863|gb|FC392280.1|FC392280
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|162223262|gb|FC400231.1|FC400231
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|100393791|gb|BY953515.1|BY953515
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCTTACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTTATGCGTTCCCTACCC-AAEST: gi|208398004|gb|DC924890.1|DC924890
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCC-TACCCCAA
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|208369204|gb|DC955833.1|DC955833
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCCAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAATEST: gi|208361600|gb|DC942843.1|DC942843
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCCAGACCATACAACTGTGAGTGTCATGCGTTCCCTACCCCAAEST: gi|37839123|gb|BJ597131.1|BJ597131
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCC-TACCCCAA
EST: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAA GTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
genomic: CCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctg ... ttgtgtgcagGTGAATGCGCTAGACCATACAACTGTGAGTGTCATGCGTTCCTACCCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATACATCTGGGAGGCCACTTCGCAGGAGGTCAAATCCTTCATTGGGCCGAGGCAGTTGATGGCAAAGGCGCCTTGTTATCAGGGGATATCATACAAgtaagctctgcacttgacactagtttgcagatatgatcttgattaatggcaccgatagagaactaagagcatggcgaggggaatcgatctccaaggagcgtgaagaccaggtttcatgtattgctgcattcattgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG