1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagccttcctttgaggacctgcttttattttggatgtgctgcataaaatatccgcttgtagtttttaaaaaattatttgctataccaattattt...
species | Physcomitrella patens |
transcript | PP1S76_212V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162224580|gb|FC400476.1|FC400476
genomic: CAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|67508569|gb|BJ941432.1|BJ941432
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162250386|gb|FC426248.1|FC426248
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|37824297|gb|BJ582363.1|BJ582363
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162250385|gb|FC426247.1|FC426247
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162177237|gb|FC353394.1|FC353394
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162177238|gb|FC353395.1|FC353395
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|67691788|gb|BJ952021.1|BJ952021
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|208372787|gb|DC952674.1|DC952674
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: AGTGGATCAAGGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162224579|gb|FC400475.1|FC400475
genomic: AGTGGATCAA-GGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagccttcctttgaggacctgcttttattttggatgtgctgcataaaatatccgcttgtagtttttaaaaaattatttgctataccaattattt
- - - AGTGGA
- - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC