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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatcaatgcctccgaagttcacaacaagttgttgcttgcttgcatgacagattccatgaaaggttgaacaaatgccgcgttcctcactctggatgttcacactttgacgcattgcag

Basic information

species Physcomitrella patens
transcript PP1S76_20V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377714|gb|DC932250.1|DC932250
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCT
EST: gi|208360091|gb|DC939339.1|DC939339
EST:     TCAGGAATTGCAATANGGGCGACTATCATCCTCANCGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTNCA-TGAATCCA-TGCGAA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAA
EST: gi|208391086|gb|DC933459.1|DC933459
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208363890|gb|DC943347.1|DC943347
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208353634|gb|DC938743.1|DC938743
EST:     TCAGGAATNGCAATANGGGCGACTATCATCCTCANCGTCTTGCTTGCAGG                         NC-TGTATCCGGA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGA
EST: gi|208370852|gb|DC936890.1|DC936890
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208390998|gb|DC929317.1|DC929317
EST:     TCAGGAATNGCA-TAGGGNCGACTATCATCCTCAACGTCTTGCTNGCAGG                         GCCTGTATCCGGANCTTCAATGAATC
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATC
EST: gi|208386873|gb|DC941577.1|DC941577
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208359616|gb|DC943172.1|DC943172
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208390907|gb|DC942225.1|DC942225
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208392065|gb|DC941913.1|DC941913
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208389268|gb|DC933296.1|DC933296
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208356993|gb|DC930023.1|DC930023
EST:     TCAGGAATTGCAATANGGGCGACTATCATCCTCANCGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTNCAATGANTCCA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCA
EST: gi|208355855|gb|DC930218.1|DC930218
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAAGCTTGGGACCAGCAA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAA-GCTTGGGACCAGCAA
EST: gi|208368624|gb|DC939975.1|DC939975
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208386377|gb|DC937044.1|DC937044
EST:     TCAGGAATNGCAATAGGGGCGACTATCATCCTCA-CGTCTTGCTNGCAGG                         GCCTGTATCCGGAGCTNCAATGANTCCA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCA
EST: gi|208388702|gb|DC941515.1|DC941515
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCA-T
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208357532|gb|DC934054.1|DC934054
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAAGCTTGGGACCAGCAA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAA-GCTTGGGACCAGCAA
EST: gi|208392541|gb|DC933941.1|DC933941
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGAAGCTNCAATGAATCCA-TGCGAAGC
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGC
EST: gi|208393397|gb|DC942495.1|DC942495
EST:     TCAGAAATTGCAATANGGGCGACTATCATCCTCANCGTCTTGCTTGCAGG                         GCCTGTATCCG
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCG
EST: gi|208367243|gb|DC939815.1|DC939815
EST:     TCAGGAATTGCANTAGGGGCGACTATCATCCTCA-CGTCTTGCTTGCAGG                         GCCTGTATCCGAAGCTTCA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCA
EST: gi|208390857|gb|DC942203.1|DC942203
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCGATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208363630|gb|DC939793.1|DC939793
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCANTGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208363344|gb|DC943566.1|DC943566
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208368474|gb|DC935997.1|DC935997
EST:     TCAGGAATNGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTNGCAGG                         GCCTGTATCCGGAGCTTCA-TGANTCCA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCA
EST: gi|208371052|gb|DC931540.1|DC931540
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTG
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTG
EST: gi|208391100|gb|DC938130.1|DC938130
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208363854|gb|DC943311.1|DC943311
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCGAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208389585|gb|DC929468.1|DC929468
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTNGCAGG                         GCCTGTATCCGGAGCTNCAATGANTCCA
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCA
EST: gi|208372919|gb|DC940550.1|DC940550
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT
EST: gi|208372997|gb|DC940628.1|DC940628
EST:     CAGGAATNGCAATANGGGCCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCA
genomic: CAGGAATTGCAATAGGGGC-GACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCA
EST: gi|208369539|gb|DC936315.1|DC936315
EST:     TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG                         GCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACNAGCAAT
genomic: TCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGGgtactcatca ... cgcattgcagGCCTGTATCCGGAGCTTCAATGAATCCAATGCGAAGCTTGGGACCAGCAAT