1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTTTTGACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttcttacattcagagaggaatgtgccatttagtcagatgtattttgcatgtggtgtcttcttttggtcctcacactagttagcattcaaaatt...
species | Physcomitrella patens |
transcript | PP1S74_21V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAAEST: gi|100439772|gb|BY962100.1|BY962100
genomic: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
EST: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAAEST: gi|100444072|gb|BY963970.1|BY963970
genomic: ACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
EST: AACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTAT TGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
genomic: AACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttc ... ttgtttgcagTGCTGAATTTTTGGGCCTTCTCTGCTTCCTTTACCTTTGCGATCGAACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGACTTTGAATGAAACCTTTCTGGTGGAGAACCGCCTCACTTTGAGAGCTATgtaagggttcttacattcagagaggaatgtgccatttagtcagatgtattttgcatgtggtgtcttcttttggtcctcacactagttagcattcaaaatt
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCT