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GTCGTCAGAAGCTTTGAGCTCTGAGCTAGGAGCTCTCTTTACAGAAGAGCAGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtaccaggtcaggattttttgttttgtctgtatgaaatatgctgaagtccgtggcagtctgttctgctatgaatcaagtcataacttgtgatcactagatctcagctcattttgaaatctcttctttaatctgactgcactggaaattgttgcgcag
species | Physcomitrella patens |
transcript | PP1S73_244V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGACEST: gi|100389158|gb|BY952362.1|BY952362
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
EST: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGACEST: gi|100442226|gb|BY981250.1|BY981250
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
EST: AGCTCTACCGTATTGATCACTATTTGGGGGAGGAGATGGTACAAAATTTG TTGATTATGAGATTCEST: gi|208398370|gb|DC912327.1|DC912327
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTC
EST: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTCAGAAGCTTTGAGCTCTGAGCTAGGAGCTCTCTTTACAGAAGAGCAGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtaccaggtcaggattttttgttttgtctgtatgaaatatgctgaagtccgtggcagtctgttctgctatgaatcaagtcataacttgtgatcactagatctcagctcattttgaaatctcttctttaatctgactgcactggaaattgttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG