1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCCAGCTTGGCCTGGGAGGGCTGTCGCGGAGGAAGTCAAGATCAGAAATGGCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatgttcgcctggcaaaaaatagtttttacccaaccgaattctcgatccgtggatgagatcattctacgagggtgcattaggagtcaattgtta...
species | Physcomitrella patens |
transcript | PP1S73_243V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|100377934|gb|BY949596.1|BY949596
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|67569708|gb|BJ942532.1|BJ942532
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|18363907|gb|BJ195979.1|BJ195979
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|100449469|gb|CJ973768.1|CJ973768
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|208344624|gb|DC912570.1|DC912570
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTGEST: gi|67571422|gb|BJ944246.1|BJ944246
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
EST: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAG ACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
genomic: GCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatg ... cggattgtagACGCTGGACATTGTTGCCGAGAATCCGGACAGATTCAAGGTCGTGGCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGCTTGGCCTGGGAGGGCTGTCGCGGAGGAAGTCAAGATCAGAAATGGCCCCAAACCTATTTCCCTCATTGGATCGACCGGTTCTATTGGCACACAGgtgggatatgttcgcctggcaaaaaatagtttttacccaaccgaattctcgatccgtggatgagatcattctacgagggtgcattaggagtcaattgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaat